Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0109.Seq
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590431-1|CAH71259.1| 1888|Homo sapiens nuclear pore membrane g...    31   2.8  
AL513546-1|CAH70552.1| 1888|Homo sapiens nuclear pore membrane g...    31   2.8  
AL358472-1|CAI14015.1| 1888|Homo sapiens nuclear pore membrane g...    31   2.8  
AK128108-1|BAC87279.1| 1423|Homo sapiens protein ( Homo sapiens ...    31   2.8  
AK125924-1|BAC86345.1| 1591|Homo sapiens protein ( Homo sapiens ...    31   2.8  
AL109839-6|CAI95635.1|  134|Homo sapiens chromosome 20 open read...    29   8.6  

>AL590431-1|CAH71259.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 68  IGIGLGTERAPEYFLLKKGISRPGPVHMES 157
           + + L  ++   + LLK+GI RPGP+H  S
Sbjct: 589 LSLDLNMDKQGVFTLLKEGIQRPGPMHCSS 618


>AL513546-1|CAH70552.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 68  IGIGLGTERAPEYFLLKKGISRPGPVHMES 157
           + + L  ++   + LLK+GI RPGP+H  S
Sbjct: 589 LSLDLNMDKQGVFTLLKEGIQRPGPMHCSS 618


>AL358472-1|CAI14015.1| 1888|Homo sapiens nuclear pore membrane
           glycoprotein 210-like (LOC91181) protein.
          Length = 1888

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 68  IGIGLGTERAPEYFLLKKGISRPGPVHMES 157
           + + L  ++   + LLK+GI RPGP+H  S
Sbjct: 589 LSLDLNMDKQGVFTLLKEGIQRPGPMHCSS 618


>AK128108-1|BAC87279.1| 1423|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46229 fis, clone TESTI4014932, weakly  similar
           to Integral membrane glycoprotein gp210 precursor. ).
          Length = 1423

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 68  IGIGLGTERAPEYFLLKKGISRPGPVHMES 157
           + + L  ++   + LLK+GI RPGP+H  S
Sbjct: 124 LSLDLNMDKQGVFTLLKEGIQRPGPMHCSS 153


>AK125924-1|BAC86345.1| 1591|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43936 fis, clone TESTI4013830, weakly  similar
           to Integral membrane glycoprotein gp210 precursor. ).
          Length = 1591

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 68  IGIGLGTERAPEYFLLKKGISRPGPVHMES 157
           + + L  ++   + LLK+GI RPGP+H  S
Sbjct: 313 LSLDLNMDKQGVFTLLKEGIQRPGPMHCSS 342


>AL109839-6|CAI95635.1|  134|Homo sapiens chromosome 20 open reading
           frame 119 protein.
          Length = 134

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 150 WRVDVDSMNCCCCYSLQTPEMTAK 221
           WR+   S  CC C+SLQ P M  K
Sbjct: 95  WRLTTQS--CCSCWSLQNPSMPRK 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,112,627
Number of Sequences: 237096
Number of extensions: 1193044
Number of successful extensions: 6961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6961
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)