Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0109.Seq
         (568 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052076-1|AAK93500.1| 1838|Drosophila melanogaster SD03094p pro...    29   4.4  
AE014296-2429|AAF49705.2| 1833|Drosophila melanogaster CG9311-PA...    29   5.8  
AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends l...    28   7.7  
AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP mot...    28   7.7  
AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends p...    28   7.7  
AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,...    28   7.7  
AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,...    28   7.7  
AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,...    28   7.7  

>AY052076-1|AAK93500.1| 1838|Drosophila melanogaster SD03094p protein.
          Length = 1838

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 99   GARSVPKPIPIPIQSKGSTERPQPTG-HRSAEES 1
            G  SVP P+P+P  +  S++   PT  H SA  S
Sbjct: 1163 GVSSVPSPVPVPTPAPTSSQAQVPTSPHPSATYS 1196


>AE014296-2429|AAF49705.2| 1833|Drosophila melanogaster CG9311-PA
            protein.
          Length = 1833

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 99   GARSVPKPIPIPIQSKGSTERPQPTG-HRSA 10
            G  SVP P+P+P  +  S++   PT  H SA
Sbjct: 1158 GVSSVPSPVPVPTPAPTSSQAQVPTSPHPSA 1188


>AF221715-1|AAF34661.1| 5554|Drosophila melanogaster split ends long
            isoform protein.
          Length = 5554

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 77   QYQYQFNQKVQRNDHSLQGTVQQKN 3
            Q Q QFNQ++Q++    Q  VQQ+N
Sbjct: 3896 QAQQQFNQQIQQHQSQQQHQVQQQN 3920


>AF188205-1|AAF13218.1| 5533|Drosophila melanogaster Spen RNP motif
            protein long isoformprotein.
          Length = 5533

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 77   QYQYQFNQKVQRNDHSLQGTVQQKN 3
            Q Q QFNQ++Q++    Q  VQQ+N
Sbjct: 3902 QAQQQFNQQIQQHQSQQQHQVQQQN 3926


>AF184612-1|AAF26299.1| 5476|Drosophila melanogaster split ends
            protein.
          Length = 5476

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 77   QYQYQFNQKVQRNDHSLQGTVQQKN 3
            Q Q QFNQ++Q++    Q  VQQ+N
Sbjct: 3845 QAQQQFNQQIQQHQSQQQHQVQQQN 3869


>AE014134-58|AAN10511.1| 5476|Drosophila melanogaster CG18497-PC,
            isoform C protein.
          Length = 5476

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 77   QYQYQFNQKVQRNDHSLQGTVQQKN 3
            Q Q QFNQ++Q++    Q  VQQ+N
Sbjct: 3845 QAQQQFNQQIQQHQSQQQHQVQQQN 3869


>AE014134-57|AAF51534.2| 5533|Drosophila melanogaster CG18497-PB,
            isoform B protein.
          Length = 5533

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 77   QYQYQFNQKVQRNDHSLQGTVQQKN 3
            Q Q QFNQ++Q++    Q  VQQ+N
Sbjct: 3902 QAQQQFNQQIQQHQSQQQHQVQQQN 3926


>AE014134-56|AAF51535.2| 5560|Drosophila melanogaster CG18497-PA,
            isoform A protein.
          Length = 5560

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 77   QYQYQFNQKVQRNDHSLQGTVQQKN 3
            Q Q QFNQ++Q++    Q  VQQ+N
Sbjct: 3902 QAQQQFNQQIQQHQSQQQHQVQQQN 3926


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,575,829
Number of Sequences: 53049
Number of extensions: 371722
Number of successful extensions: 1501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2213979693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)