Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0109.Seq
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical ...    31   0.58 
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.15 protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 201 TPEMTAK--NLIGTRISRLVNFH--YDYRLAIFNFLVRYNIEQFLFFACFIALNVTIG*F 368
           TP+M  +   LI    + L  FH  YD RL +++F ++Y  E F    CFI  +     F
Sbjct: 170 TPKMVRRYSKLILILATFLTGFHSLYDIRL-LYHFCIKYRDESFWVARCFIGYSSLTSAF 228

Query: 369 G 371
           G
Sbjct: 229 G 229


>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
            protein Y59E9AL.4 protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 350  VQSDETGEEEELFDVVSYQKIEDGKPVIIMKVYQSR 243
            V+  E  EEEE+ D++S  +I+D +P ++ + +  R
Sbjct: 937  VRRQEENEEEEIPDILSPGEIDDLEPPVVPQEFPPR 972


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 138 PGRDIPFFRRKYSGARSVPKPIPIPIQSKGSTERPQPTGHRSAEES 1
           P R+IP  RR+ S + S   P P   +S+ S   P P   RS  +S
Sbjct: 402 PKREIPPARRRRSPSASKSPPAPKRAKSR-SKSPPAPRRRRSPSQS 446


>AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical
           protein Y50D4A.4 protein.
          Length = 622

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 338 ETGEEEELFDVVSYQKIEDGKPV-IIMKVYQSR 243
           E GE  +L  +V+Y+ I D KP+  ++  Y++R
Sbjct: 481 EAGEMSKLQQIVTYRVINDSKPLAFLLLSYEAR 513


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,524,390
Number of Sequences: 27780
Number of extensions: 188040
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)