Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0109.Seq
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19190.1 68416.m02436 expressed protein                             29   2.2  
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    28   5.0  
At5g52680.1 68418.m06540 heavy-metal-associated domain-containin...    27   8.7  

>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 138  PGRDIPFFRRKYSGARSVPKPIPIPIQSKGSTERPQPTGHRSAEES 1
            P  + P    ++ GA S+ KP+     S GST      GH   EE+
Sbjct: 1505 PDPETPLEENRFFGANSLEKPVVSMGDSGGSTMSVSVQGHNIIEEA 1550


>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 72  PIPIQSKGSTERPQPTGHRSAEES 1
           PIP    G+T+ P+P GH   + S
Sbjct: 614 PIPSSHMGNTQNPRPVGHPPQDSS 637


>At5g52680.1 68418.m06540 heavy-metal-associated domain-containing
           protein low similarity to pneumococcal surface protein A
           PspA [Streptococcus pneumoniae] GI:7800654; contains
           Pfam profile PF00403: Heavy-metal-associated domain
          Length = 238

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 150 IWTGPGRDIPFFRRKYSGARSVPK-PIPIPIQSKGSTERPQP 28
           I +GP   +     K + AR   + P P+P+++   T +P P
Sbjct: 159 IKSGPDGQVDVTNIKINNARKTSRVPAPVPVRAPAPTPKPAP 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,874,655
Number of Sequences: 28952
Number of extensions: 175337
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)