Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0108.Seq
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    29   0.41 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   6.6  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.6  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   6.6  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   6.6  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   8.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   8.8  

>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = +3

Query: 171 IAEKLQSDRKRNGYQREPKRY*QMCLLGPITPAIQTARTKSISEAKKAFLNATVSPNAPP 350
           + EK + + K+N  Q +P+ Y ++       PA+    +  + ++K     +  SP  P 
Sbjct: 99  VKEKDRLESKKNERQGKPRSYNELLRQASSAPAVNETSSSGLLQSKDKRSQSPHSPKKPV 158

Query: 351 TKPDKRIEP 377
                R +P
Sbjct: 159 KNSSSRDQP 167


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +3

Query: 255 PITPAIQTARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITK--SEDTR 428
           P   + ++ ++K+++       N T +P +   K  KRI+PT   A L+ +T+     +R
Sbjct: 296 PTKKSNRSEQSKTVANTNVGSKNGT-TPRSFAQKSSKRIKPTEGSANLNTVTELTGIGSR 354

Query: 429 STGGGHDLKTS--SDVKSK 479
               G  +K S  S  KSK
Sbjct: 355 IAMNGSSVKASNISTEKSK 373



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +3

Query: 285 TKSISEAKKAFLNATVSPNAP--PTKPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKT 458
           TK +S+ +KAFLN   +PNA    ++ D+  E T+  A       SE T+ +      KT
Sbjct: 255 TKLVSK-EKAFLNTVTTPNADLIISEEDELTEMTLRTA-----NGSEPTKKSNRSEQSKT 308

Query: 459 --SSDVKSKETPNEATHAGVMLKRKIDPNQRKVSFKIKT 569
             +++V SK      + A    KR I P +   +    T
Sbjct: 309 VANTNVGSKNGTTPRSFAQKSSKR-IKPTEGSANLNTVT 346


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +3

Query: 261 TPAIQTARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGG 440
           T + + A TKS  EA  + L  T SP+     P K  E      +     K ED  S+  
Sbjct: 111 TGSTKAADTKSSVEATISPLKDTKSPSNASVFPIKPTESKTSTTKDSETAKEEDDASSST 170

Query: 441 GHDLK-TSSDVKSKETPNEATHA 506
              ++ T+S   S  T   AT A
Sbjct: 171 TKAVEATTSKASSAHTDTLATSA 193


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 599 DSRXPVECSGSFNFKADFSLIRIYFSL*HDSSVGRFV 489
           D    ++CSGSF + A      +   L H+   GRFV
Sbjct: 122 DDYGRIDCSGSFLYDAGVVTGVVLAVLGHEDEQGRFV 158


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 290 FRSSCLYRWRYGTE*THLLVSFWFSLIAISFSVTL 186
           +R +CL R+ +G +   LLV F FS++ I   + L
Sbjct: 149 WRHTCL-RYPFGMQQMELLVDFSFSILLIFLGMNL 182


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 79  TSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTE--KEMAIKENQ 225
           T   L LM  VH  ++  I D   +H  +   +RN  +TE  K+ ++ +NQ
Sbjct: 179 TMSALNLMAIVHATDIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ 229


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +3

Query: 276 TARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLK 455
           TA     +EAK A   A +   +   + +K  +   + A L    + +DT+ T      K
Sbjct: 396 TAEISEKTEAKNADSEANLEEKSDVGE-EKESKDENNKASLHKDVEEKDTKITNEDTG-K 453

Query: 456 TSSDVKSKET 485
           T +DVK+KET
Sbjct: 454 TETDVKAKET 463


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 85  RLLKLMEAVHTKELIIISDDAKQHG-TVKALLRNFRVTEKEMAIKENQND 231
           ++L L+E    +E   IS    ++  TVK L R  R++E EMA+KE +++
Sbjct: 323 KILDLLEMKQQEENDRISHIEYENDLTVKKLKR--RISELEMAVKEYESE 370


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 510 LQRGSLRLAFLCS*HHLMFLSHVLRQCFSCLRF 412
           ++RG + LA + S   L  ++HVL  C  CL +
Sbjct: 386 MKRGDVSLAQISSGGDLKKINHVLDTCPLCLNY 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,868
Number of Sequences: 5004
Number of extensions: 41673
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)