Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0108.Seq
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0569 - 4223494-4224261,4224770-4225090                           32   0.42 
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395...    28   6.8  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    28   6.8  
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339...    27   9.0  
11_06_0026 - 19351596-19351605,19353216-19353721                       27   9.0  

>07_01_0569 - 4223494-4224261,4224770-4225090
          Length = 362

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 187 RVTEKEMAIKEN-QNDTNKCVYSVP*RQRYKQLERNQLAKRRKPS*MQQLVLMPL 348
           R T K   +K + +ND ++ ++  P  +RY  L +N L KR+  S ++    MPL
Sbjct: 192 RQTRKPQPLKVSAKNDIHRDLFCRPSSERYNDLAKNNLTKRKPDSIVRPPSQMPL 246


>05_05_0353 -
           24338717-24338946,24339046-24339134,24339421-24339500,
           24339768-24339902,24340231-24340461,24340540-24340634,
           24340734-24340819,24341467-24341570,24341674-24341805,
           24341883-24341999,24342170-24342229,24342779-24342820,
           24342878-24342952,24343127-24343177,24343256-24343436,
           24343548-24343594,24343710-24343775
          Length = 606

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 339 NAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGG 443
           N+P  +   R+ P  H   LD++ + E++R+ GGG
Sbjct: 94  NSPSQELQPRLVPEAH---LDVLVEHEESRNIGGG 125


>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
            4498179-4499263,4499351-4500296
          Length = 1264

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 78   NIEALETNGSCTYKRTYNNQ*RRKTTRHGQGIAEKLQSDRKRNG 209
            +IEA ET+G+ T +   +   RRK    G G+A K +     +G
Sbjct: 1004 SIEAPETSGNLTIRVARDKGKRRKRKVGGAGLAAKFEVSSSHSG 1047


>12_02_1015 +
           25331667-25332169,25333305-25333406,25333775-25333919,
           25334002-25334186,25334297-25334401,25334507-25334604,
           25334686-25334924,25335030-25335123,25335190-25335275,
           25335579-25335677,25335804-25335869
          Length = 573

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 197 SVTLKFLSNALTVPCCFASSLIIISSFVCTASI-SFKSLDVRGLCML 60
           S  L  L ++L   C    +L I S  +C  ++ S +S ++RGLCML
Sbjct: 271 STDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCML 317


>11_06_0026 - 19351596-19351605,19353216-19353721
          Length = 171

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 70  RPLTSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMA 210
           R L  +L K  EAV  +E I +  +  +H  + A        EKE+A
Sbjct: 66  RQLGEQLTKREEAVAGREAIHLESNCAEHAAMAARASELEAWEKELA 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,269
Number of Sequences: 37544
Number of extensions: 248193
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)