Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0108.Seq
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 31 0.99
SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2) 29 4.0
SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_55240| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_33557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9) 27 9.2
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18) 27 9.2
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1368
Score = 31.1 bits (67), Expect = 0.75
Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 2/175 (1%)
Frame = +3
Query: 54 VDKHTQASNIEALETNGSCTYKRTYNNQ*RRKTTRHGQGIAEKLQSDRKRNGYQREPKRY 233
V KH N RT +NQ T+H G ++ SD + + + +
Sbjct: 1193 VQKHMVGLRRAISSQNSRSFAPRTTDNQHTTSDTQHTAGDTQRTTSDTQHTTHNTQHTTH 1252
Query: 234 -*QMCLLGPITPAIQTARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIIT 410
Q I T +T S+++ T + N T K + ++ D
Sbjct: 1253 NTQHTASDTKHTTIDTQQTTSVTQQATYDTYHTANDNKHSTSHTKHLTNDTYHTASDTKH 1312
Query: 411 KSEDTRSTGGGHDLK-TSSDVKSKETPNEATHAGVMLKRKIDPNQRKVSFKIKTA 572
+ DT+ T D K T+SD +K T ++ H K + S TA
Sbjct: 1313 TASDTKHTAS--DTKHTASD--TKHTASDTKHTASDTKHTASDTKHTASDTKHTA 1363
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 31.1 bits (67), Expect = 0.75
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -2
Query: 203 SFSVTLKFLSNALTVPCCFASSLIIISSFVCTASISFKSLDVRGLCMLIYAICL 42
+ SV+L+FL L C FA S+ + ++C I S+ +R +C +YAIC+
Sbjct: 1959 ALSVSLRFLY--LCAFCIFALSVSLRYLYLCAICIFALSVSLRYIC--LYAICI 2008
>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 810
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 324 ATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKTSSD 467
+ V + P K K+ E ++ D +TK + ++ G G ++TS D
Sbjct: 627 SVVDKSGKPAKASKKREHSISGGDTDSVTKKKKKKAAGKGDSVQTSED 674
>SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 183 LQSDRKRNGYQREPKRY*QMCLLGPITPAIQTARTKSISEAKKAFLNATVSPNAPPTKPD 362
+ S RKR +R+ K LL P +P + R + +L++ VSPN P T+ D
Sbjct: 321 INSGRKRK--RRKLKESDLSDLLSPDSPLFRNKRKSGDLLSASGYLDSLVSPNTPNTRSD 378
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 339 NAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGG 443
N PP D R +P YAQ+D K++ + G G
Sbjct: 1757 NGPPAYEDTRSKPEPQYAQVDRSKKTKKKQLAGSG 1791
>SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +3
Query: 210 YQREPKRY*QMCLLGPITPAIQTARTKSISEAKKAFLNATVSPNAPPTKPD-KRIEPTVH 386
+Q +PK C+L P+ +I +I+ A + +NA++S PT D I P++
Sbjct: 281 HQSKPKS----CILDPVPTSILKQSIDAIAPAITSIVNASLSSGVFPTSLDCGVINPSIK 336
Query: 387 YAQLDIITKSEDTRSTGGGHDLKTSSDVKSKETPNEATHAGVML 518
LD T KT V + +T N +ML
Sbjct: 337 KQSLDREAYPSYRPITNVAFPPKTLERVAANQTMNYLIPNDLML 380
>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
Length = 545
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 249 VNTFVSIVLVLFDSHFFFGHSE-VSQQCLDRAVLFCVVTDYYKFFCMY 109
+ +S++++++ +H F V L R+V +C++ DY+ C++
Sbjct: 251 ITIIISLIIIIYVTHIIFNIIIIVINVTLHRSVSYCLLCDYFSPECIH 298
>SB_56535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 133 ISDDAKQHGTVKALLRNFRVTEKEMAIKENQNDTNKCVYSVP*RQRYKQLERNQLAKRRK 312
+S+ G+ K LL+ RV + N+N TN+C + P +Q+ +Q +N + K
Sbjct: 59 VSEYCLMVGSNKYLLKYRRVYTSRCQVP-NENSTNQCQENPPTKQQRQQQNKNSRPEGHK 117
>SB_55240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 402 IITKSEDTRSTGGGHDLKTSSDVKSKETPNEATHAGVMLKRKIDPNQ 542
+++ D S GH++K ++ S+ +EATHA + L++ NQ
Sbjct: 8 LVSTVNDVFSYWAGHEMKAAALTASRSLRSEATHA-LTLQKNTTTNQ 53
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 246 LLGPITPAIQTARTKSISEAKKAFLNATVSPNAPPT 353
LLG + PAI S+ + + N +++P PPT
Sbjct: 6387 LLGRVQPAISAPTKPSLELSPITYNNPSINPPTPPT 6422
>SB_33557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 354 KPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKTSSDVKSKETPNE 494
K +++EP++ + L+++ E S GG D K KSK++ E
Sbjct: 27 KRKQKLEPSLKWRTLNLLGNDE---SDGGSEDKKKQGTAKSKQSRRE 70
>SB_59430| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
Length = 442
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 343 PLPPNRTKGSNQQYIMHN 396
PLPP T+G + +Y+MH+
Sbjct: 76 PLPPYNTRGYSYRYLMHS 93
>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
Length = 1191
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 235 NKCVYSVP*RQRYKQLERNQLAKRRKPS*MQQLVLMPL 348
NKC Y+ +YK+++ +Q+ + S +Q VL+PL
Sbjct: 86 NKCYYTKA--SKYKEVKEDQIGWKHHRSDVQSYVLVPL 121
>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 175 LRNFRVTEKE--MAIKENQNDTNKCVYSVP*RQRYKQLERNQLAKRRK 312
++ F+ EKE +A K+ + D K RQR + LE +LAK ++
Sbjct: 252 IKKFKEEEKERKLAEKKAKEDAAKAAAEEKERQRQEALEAERLAKEKE 299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,854,985
Number of Sequences: 59808
Number of extensions: 315606
Number of successful extensions: 1033
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -