Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0108.Seq
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51521-1|CAA35893.1|  586|Homo sapiens protein ( Human mRNA for ...    32   1.9  
J05021-1|AAA61278.1|  575|Homo sapiens VIL2 protein.                   32   1.9  
BC068458-1|AAH68458.1|  586|Homo sapiens villin 2 (ezrin) protein.     32   1.9  
BC013903-1|AAH13903.1|  586|Homo sapiens villin 2 (ezrin) protein.     32   1.9  
AL589931-5|CAI95307.1|  586|Homo sapiens villin 2 (ezrin) protein.     32   1.9  
AL162086-1|CAB82418.1|  630|Homo sapiens hypothetical protein pr...    32   1.9  
X98654-1|CAA67224.1| 1244|Homo sapiens homologue of Drosphila re...    31   2.5  
BC128584-1|AAI28585.1|  974|Homo sapiens PITPNM family member 3 ...    31   2.5  
BC128583-1|AAI28584.1|  974|Homo sapiens PITPNM family member 3 ...    31   2.5  
BC022230-1|AAH22230.1| 1243|Homo sapiens PITPNM1 protein protein.      31   2.5  
AY429102-1|AAR06909.1| 1243|Homo sapiens phosphatidylinositol tr...    31   2.5  
AL389994-1|CAB97544.1|  912|Homo sapiens hypothetical protein, s...    31   2.5  
AF334586-1|AAK01446.1|  974|Homo sapiens NIR1 protein.                 31   2.5  
AF334584-1|AAK01444.1| 1244|Homo sapiens NIR2 protein.                 31   2.5  
AB209130-1|BAD92367.1|  879|Homo sapiens Hypothetical protein pr...    31   2.5  
BC025724-1|AAH25724.1|  316|Homo sapiens retinol dehydrogenase 1...    31   4.3  
AK054835-1|BAB70811.1|  316|Homo sapiens (ARSDR1) mRNA.  protein.      31   4.3  

>X51521-1|CAA35893.1|  586|Homo sapiens protein ( Human mRNA for
           ezrin. ).
          Length = 586

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 454 KHQVMLRAKKRQTKRPTLESC*REK*IRIKEKSALKLKLPEHSTGXRLSLRKLS 615
           KHQ  L  ++ +T++   E+  REK   ++EK  L L+L ++    + + R+LS
Sbjct: 313 KHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAERELS 366


>J05021-1|AAA61278.1|  575|Homo sapiens VIL2 protein.
          Length = 575

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 454 KHQVMLRAKKRQTKRPTLESC*REK*IRIKEKSALKLKLPEHSTGXRLSLRKLS 615
           KHQ  L  ++ +T++   E+  REK   ++EK  L L+L ++    + + R+LS
Sbjct: 302 KHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAERELS 355


>BC068458-1|AAH68458.1|  586|Homo sapiens villin 2 (ezrin) protein.
          Length = 586

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 454 KHQVMLRAKKRQTKRPTLESC*REK*IRIKEKSALKLKLPEHSTGXRLSLRKLS 615
           KHQ  L  ++ +T++   E+  REK   ++EK  L L+L ++    + + R+LS
Sbjct: 313 KHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAERELS 366


>BC013903-1|AAH13903.1|  586|Homo sapiens villin 2 (ezrin) protein.
          Length = 586

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 454 KHQVMLRAKKRQTKRPTLESC*REK*IRIKEKSALKLKLPEHSTGXRLSLRKLS 615
           KHQ  L  ++ +T++   E+  REK   ++EK  L L+L ++    + + R+LS
Sbjct: 313 KHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAERELS 366


>AL589931-5|CAI95307.1|  586|Homo sapiens villin 2 (ezrin) protein.
          Length = 586

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 454 KHQVMLRAKKRQTKRPTLESC*REK*IRIKEKSALKLKLPEHSTGXRLSLRKLS 615
           KHQ  L  ++ +T++   E+  REK   ++EK  L L+L ++    + + R+LS
Sbjct: 313 KHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAERELS 366


>AL162086-1|CAB82418.1|  630|Homo sapiens hypothetical protein
           protein.
          Length = 630

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 454 KHQVMLRAKKRQTKRPTLESC*REK*IRIKEKSALKLKLPEHSTGXRLSLRKLS 615
           KHQ  L  ++ +T++   E+  REK   ++EK  L L+L ++    + + R+LS
Sbjct: 357 KHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAERELS 410


>X98654-1|CAA67224.1| 1244|Homo sapiens homologue of Drosphila
           retinal degeneration B gene protein.
          Length = 1244

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASDT 274
           P++KW  KRT+  + NV T +H ASDT
Sbjct: 900 PREKWQRKRTQVKIRNV-TSNHRASDT 925


>BC128584-1|AAI28585.1|  974|Homo sapiens PITPNM family member 3
           protein.
          Length = 974

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
           P++KWL KRT+  L NV T +H A+D
Sbjct: 616 PREKWLRKRTQVKLRNV-TANHRAND 640


>BC128583-1|AAI28584.1|  974|Homo sapiens PITPNM family member 3
           protein.
          Length = 974

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
           P++KWL KRT+  L NV T +H A+D
Sbjct: 616 PREKWLRKRTQVKLRNV-TANHRAND 640


>BC022230-1|AAH22230.1| 1243|Homo sapiens PITPNM1 protein protein.
          Length = 1243

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASDT 274
           P++KW  KRT+  + NV T +H ASDT
Sbjct: 899 PREKWQRKRTQVKIRNV-TSNHRASDT 924


>AY429102-1|AAR06909.1| 1243|Homo sapiens phosphatidylinositol
           transfer protein membrane-associated 1 protein.
          Length = 1243

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASDT 274
           P++KW  KRT+  + NV T +H ASDT
Sbjct: 899 PREKWQRKRTQVKIRNV-TSNHRASDT 924


>AL389994-1|CAB97544.1|  912|Homo sapiens hypothetical protein,
           similar to (AF058693) M-RdgB2 retinal degeneration
           protei protein.
          Length = 912

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
           P++KWL KRT+  L NV T +H A+D
Sbjct: 574 PREKWLRKRTQVKLRNV-TANHRAND 598


>AF334586-1|AAK01446.1|  974|Homo sapiens NIR1 protein.
          Length = 974

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
           P++KWL KRT+  L NV T +H A+D
Sbjct: 616 PREKWLRKRTQVKLRNV-TANHRAND 640


>AF334584-1|AAK01444.1| 1244|Homo sapiens NIR2 protein.
          Length = 1244

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASDT 274
           P++KW  KRT+  + NV T +H ASDT
Sbjct: 900 PREKWQRKRTQVKIRNV-TSNHRASDT 925


>AB209130-1|BAD92367.1|  879|Homo sapiens Hypothetical protein
           protein.
          Length = 879

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
           P++KWL KRT+  L NV T +H A+D
Sbjct: 541 PREKWLRKRTQVKLRNV-TANHRAND 565


>BC025724-1|AAH25724.1|  316|Homo sapiens retinol dehydrogenase 12
           (all-trans/9-cis/11-cis) protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 395 LCIMYCWFDPFVRFGGRGIRT--NCCIQEGFLRFAN*FRSSCLYRW 264
           LC+++  F PFV+    G +T  +C + EG    +  + S C   W
Sbjct: 244 LCLLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTW 289


>AK054835-1|BAB70811.1|  316|Homo sapiens (ARSDR1) mRNA.  protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 395 LCIMYCWFDPFVRFGGRGIRT--NCCIQEGFLRFAN*FRSSCLYRW 264
           LC+++  F PFV+    G +T  +C + EG    +  + S C   W
Sbjct: 244 LCLLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTW 289


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,708,714
Number of Sequences: 237096
Number of extensions: 1367939
Number of successful extensions: 3444
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3443
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)