Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0108.Seq
(618 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-2048|AAF58145.1| 532|Drosophila melanogaster CG16801-P... 30 2.2
AE013599-2047|AAM68536.1| 744|Drosophila melanogaster CG16801-P... 30 2.2
X56023-1|CAA39500.1| 548|Drosophila melanogaster swallow protein. 29 5.0
AY069487-1|AAL39632.1| 548|Drosophila melanogaster LD21771p pro... 29 5.0
AE014298-885|AAF46160.3| 548|Drosophila melanogaster CG3429-PA ... 29 5.0
Y08035-1|CAA69291.1| 1250|Drosophila melanogaster retinal degene... 29 6.6
X57978-1|CAA41044.1| 1054|Drosophila melanogaster retinal degene... 29 6.6
BT011130-1|AAR82797.1| 729|Drosophila melanogaster HL04242p pro... 29 6.6
AY052111-1|AAK93535.1| 522|Drosophila melanogaster SD05804p pro... 29 6.6
AY051422-1|AAK92846.1| 1259|Drosophila melanogaster GH09970p pro... 29 6.6
AF109308-1|AAD16981.1| 514|Drosophila melanogaster putative G-p... 29 6.6
AE014298-1961|AAF48315.1| 1250|Drosophila melanogaster CG11111-P... 29 6.6
AE014298-1960|AAX52495.1| 1259|Drosophila melanogaster CG11111-P... 29 6.6
AE014298-1959|AAX52494.1| 1259|Drosophila melanogaster CG11111-P... 29 6.6
AE014298-1958|AAF48316.2| 1259|Drosophila melanogaster CG11111-P... 29 6.6
AE014296-90|AAF47379.2| 514|Drosophila melanogaster CG6936-PA, ... 29 6.6
AE014296-89|AAN11440.1| 522|Drosophila melanogaster CG6936-PB, ... 29 6.6
>AE013599-2048|AAF58145.1| 532|Drosophila melanogaster CG16801-PA,
isoform A protein.
Length = 532
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 246 LLGPITPAIQ-TARTKSISEAKKAFLNATVSPNAPPTKPDK 365
L GP T + TART S KK + A+ NAPP P K
Sbjct: 41 LAGPHTNTLTLTARTSSCRSIKKERIKASQQANAPPELPLK 81
>AE013599-2047|AAM68536.1| 744|Drosophila melanogaster CG16801-PB,
isoform B protein.
Length = 744
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 246 LLGPITPAIQ-TARTKSISEAKKAFLNATVSPNAPPTKPDK 365
L GP T + TART S KK + A+ NAPP P K
Sbjct: 41 LAGPHTNTLTLTARTSSCRSIKKERIKASQQANAPPELPLK 81
>X56023-1|CAA39500.1| 548|Drosophila melanogaster swallow protein.
Length = 548
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 327 TVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGG-HDLKTSSDVKSKETP 488
+V+P+A + +++ +H LD + S + +G G H ++TSS + TP
Sbjct: 333 SVAPSARVAQNPVQVQRAIHPQSLDFSSVSTEADGSGSGEHRVETSSRALVRRTP 387
>AY069487-1|AAL39632.1| 548|Drosophila melanogaster LD21771p
protein.
Length = 548
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 327 TVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGG-HDLKTSSDVKSKETP 488
+V+P+A + +++ +H LD + S + +G G H ++TSS + TP
Sbjct: 333 SVAPSARVAQNPVQVQRAIHPQSLDFSSVSTEADGSGSGEHRVETSSRALVRRTP 387
>AE014298-885|AAF46160.3| 548|Drosophila melanogaster CG3429-PA
protein.
Length = 548
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 327 TVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGG-HDLKTSSDVKSKETP 488
+V+P+A + +++ +H LD + S + +G G H ++TSS + TP
Sbjct: 333 SVAPSARVAQNPVQVQRAIHPQSLDFSSVSTEADGSGSGEHRVETSSRALVRRTP 387
>Y08035-1|CAA69291.1| 1250|Drosophila melanogaster retinal
degeneration B protein protein.
Length = 1250
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 936 PREKWIKKRTSVKLKNV-AANHRAND 960
>X57978-1|CAA41044.1| 1054|Drosophila melanogaster retinal
degeneration B protein protein.
Length = 1054
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 936 PREKWIKKRTSVKLKNV-AANHRAND 960
>BT011130-1|AAR82797.1| 729|Drosophila melanogaster HL04242p
protein.
Length = 729
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 424 PREKWIKKRTSVKLKNV-AANHRAND 448
>AY052111-1|AAK93535.1| 522|Drosophila melanogaster SD05804p
protein.
Length = 522
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -2
Query: 173 NALTVPCCFASSLIIISSFVC---TASISF---KSLDVRGLCMLIYAICL 42
N L VP ++++ISS +C T ++ K ++ G C + Y +CL
Sbjct: 208 NCLIVPSITGQTVVMISSLICMVLTIAVYLFVKKLQNLHGKCFICYMVCL 257
>AY051422-1|AAK92846.1| 1259|Drosophila melanogaster GH09970p protein.
Length = 1259
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 936 PREKWIKKRTSVKLKNV-AANHRAND 960
>AF109308-1|AAD16981.1| 514|Drosophila melanogaster putative
G-protein-coupled receptorprotein.
Length = 514
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -2
Query: 173 NALTVPCCFASSLIIISSFVC---TASISF---KSLDVRGLCMLIYAICL 42
N L VP ++++ISS +C T ++ K ++ G C + Y +CL
Sbjct: 208 NCLIVPSITGQTVVMISSLICMVLTIAVYLFVKKLQNLHGKCFICYMVCL 257
>AE014298-1961|AAF48315.1| 1250|Drosophila melanogaster CG11111-PB,
isoform B protein.
Length = 1250
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 936 PREKWIKKRTSVKLKNV-AANHRAND 960
>AE014298-1960|AAX52495.1| 1259|Drosophila melanogaster CG11111-PD,
isoform D protein.
Length = 1259
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 936 PREKWIKKRTSVKLKNV-AANHRAND 960
>AE014298-1959|AAX52494.1| 1259|Drosophila melanogaster CG11111-PC,
isoform C protein.
Length = 1259
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 936 PREKWIKKRTSVKLKNV-AANHRAND 960
>AE014298-1958|AAF48316.2| 1259|Drosophila melanogaster CG11111-PA,
isoform A protein.
Length = 1259
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 194 PKKKWLSKRTKTILTNVFTRSHNASD 271
P++KW+ KRT L NV +H A+D
Sbjct: 936 PREKWIKKRTSVKLKNV-AANHRAND 960
>AE014296-90|AAF47379.2| 514|Drosophila melanogaster CG6936-PA,
isoform A protein.
Length = 514
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -2
Query: 173 NALTVPCCFASSLIIISSFVC---TASISF---KSLDVRGLCMLIYAICL 42
N L VP ++++ISS +C T ++ K ++ G C + Y +CL
Sbjct: 208 NCLIVPSITGQTVVMISSLICMVLTIAVYLFVKKLQNLHGKCFICYMVCL 257
>AE014296-89|AAN11440.1| 522|Drosophila melanogaster CG6936-PB,
isoform B protein.
Length = 522
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -2
Query: 173 NALTVPCCFASSLIIISSFVC---TASISF---KSLDVRGLCMLIYAICL 42
N L VP ++++ISS +C T ++ K ++ G C + Y +CL
Sbjct: 208 NCLIVPSITGQTVVMISSLICMVLTIAVYLFVKKLQNLHGKCFICYMVCL 257
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,075,876
Number of Sequences: 53049
Number of extensions: 453007
Number of successful extensions: 1660
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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