Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0108.Seq
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93785-7|CAB07863.1| 107|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z92803-12|CAB07248.1| 107|Caenorhabditis elegans Hypothetical p... 31 0.66
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 29 2.0
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 28 4.6
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 28 4.6
Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 28 6.1
Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL132865-4|CAB60604.1| 458|Caenorhabditis elegans Hypothetical ... 27 8.1
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ... 27 8.1
AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z93785-7|CAB07863.1| 107|Caenorhabditis elegans Hypothetical
protein K01G5.8b protein.
Length = 107
Score = 31.1 bits (67), Expect = 0.66
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +3
Query: 330 VSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKTSSDVKSKETPNEATHAG 509
VS AP K K+ +P + Q+D+ + + ++GGG KT ++++ E +A A
Sbjct: 15 VSTEAP--KKTKKSKPAMDLKQVDMTIRRDSRNTSGGGPH-KTEAELRF-EARRQANMAE 70
Query: 510 VMLKRKIDPNQRKVSFKIKTAG 575
MLK+ ++ KV K G
Sbjct: 71 RMLKQAALSHREKVEKLNKQLG 92
>Z92803-12|CAB07248.1| 107|Caenorhabditis elegans Hypothetical
protein K01G5.8b protein.
Length = 107
Score = 31.1 bits (67), Expect = 0.66
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +3
Query: 330 VSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKTSSDVKSKETPNEATHAG 509
VS AP K K+ +P + Q+D+ + + ++GGG KT ++++ E +A A
Sbjct: 15 VSTEAP--KKTKKSKPAMDLKQVDMTIRRDSRNTSGGGPH-KTEAELRF-EARRQANMAE 70
Query: 510 VMLKRKIDPNQRKVSFKIKTAG 575
MLK+ ++ KV K G
Sbjct: 71 RMLKQAALSHREKVEKLNKQLG 92
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 29.5 bits (63), Expect = 2.0
Identities = 29/126 (23%), Positives = 55/126 (43%)
Frame = +3
Query: 129 NNQ*RRKTTRHGQGIAEKLQSDRKRNGYQREPKRY*QMCLLGPITPAIQTARTKSISEAK 308
N R T R + A + ++++ +++EPK+ + GP P + A K++ + +
Sbjct: 1424 NRMKERFTKREAKKKAVEKAKEKEKKEHRKEPKKANEP---GP-APKSEKAVEKAVEKVE 1479
Query: 309 KAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKTSSDVKSKETP 488
K SP PP KP + P ++D I + S+ ++S + K+ P
Sbjct: 1480 KK----PKSPQKPPAKPTAQKPPLKKTEEVDGIEREASESSS-----KESSVAPEEKKNP 1530
Query: 489 NEATHA 506
+ T A
Sbjct: 1531 KKITFA 1536
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 28.3 bits (60), Expect = 4.6
Identities = 29/112 (25%), Positives = 46/112 (41%)
Frame = +3
Query: 258 ITPAIQTARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTG 437
I A +TA T + + T P T PD IE + A+ D+ S G
Sbjct: 282 IGEAAETAETDGAANLGYDVVLTTDPPVDTVTHPDPPIEEIIKLAEPISAGDEADSESEG 341
Query: 438 GGHDLKTSSDVKSKETPNEATHAGVMLKRKIDPNQRKVSFKIKTAGTFHRXP 593
GG + + E P HAG L+R+I ++ ++ + +T G + P
Sbjct: 342 GGGE-------EHHERPPVRAHAG--LQREIVSDEEEIDTE-QTVGGEEKMP 383
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 28.3 bits (60), Expect = 4.6
Identities = 29/112 (25%), Positives = 46/112 (41%)
Frame = +3
Query: 258 ITPAIQTARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTG 437
I A +TA T + + T P T PD IE + A+ D+ S G
Sbjct: 282 IGEAAETAETDGAANLGYDVVLTTDPPVDTVTHPDPPIEEIIKLAEPISAGDEADSESEG 341
Query: 438 GGHDLKTSSDVKSKETPNEATHAGVMLKRKIDPNQRKVSFKIKTAGTFHRXP 593
GG + + E P HAG L+R+I ++ ++ + +T G + P
Sbjct: 342 GGGE-------EHHERPPVRAHAG--LQREIVSDEEEIDTE-QTVGGEEKMP 383
>Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical
protein T04A11.12 protein.
Length = 327
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -2
Query: 329 CCIQEGFLRFAN*FRSSCLYRWRYGTE*THLLVSFWFSLIAISFSVTLKFLSNALTVPCC 150
CCI F+ +S CL + T H SL +FS+ +LSNA+ V C
Sbjct: 220 CCIITNFILLLLLIKSRCLLNAQ--TRSMHSY-KVEVSLSLTTFSMIFSYLSNAMIVICS 276
Query: 149 F 147
F
Sbjct: 277 F 277
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 27.9 bits (59), Expect = 6.1
Identities = 26/111 (23%), Positives = 51/111 (45%)
Frame = +3
Query: 174 AEKLQSDRKRNGYQREPKRY*QMCLLGPITPAIQTARTKSISEAKKAFLNATVSPNAPPT 353
A+K ++++ +++EPK+ + GP P + A K++ + +K SP PP
Sbjct: 1418 AKKKAVEKEKKEHRKEPKKTNEP---GP-APKSEKAVEKAVEKVEKK----PKSPQKPPA 1469
Query: 354 KPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKTSSDVKSKETPNEATHA 506
KP + P ++D I + S+ ++S + K+ P + T A
Sbjct: 1470 KPTAQNPPLKKTEEVDGIEREASESSS-----KESSVAPEEKKNPKKITFA 1515
>Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical
protein F45G2.10 protein.
Length = 160
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 91 LKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMAIKENQ---NDTNKCV 246
+KL+ ++H K + +S H T +++ R E+ A ENQ + N+C+
Sbjct: 102 VKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156
>AL132865-4|CAB60604.1| 458|Caenorhabditis elegans Hypothetical
protein Y62E10A.6 protein.
Length = 458
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 91 LKLMEAVHTKELIIISDDAKQHG--TVKALLRNFRVTEKEMAIKENQNDTNKCVYSVP*R 264
L ++E + K++ I+ +H T+K L F++ + + ++ ++ D S+P
Sbjct: 200 LNVLEGANVKDIKILGRRGPEHVSFTIKELREQFKIKDWDSKLEISEIDAKNLTESLPKL 259
Query: 265 QRYKQLERNQLAK 303
+R K+ L K
Sbjct: 260 ERKKKRLTEVLVK 272
>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
protein C26G2.1 protein.
Length = 1270
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 258 ITPAIQTARTKSISEAKKAFLNATVS-PNAPPTKPDKRIEPTVHYAQLDIITKSEDTRST 434
I P T + K I A+ +F +S P PPT PD+ T+ + L+ I+ + + R
Sbjct: 942 IVPDDYTKKVKCI--ARNSFGTDHLSIPIIPPTHPDEPFNLTMTNSTLNTISVAWEPRFD 999
Query: 435 GGGHDL 452
GG +
Sbjct: 1000 GGSDQI 1005
>AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical
protein H25P19.1 protein.
Length = 349
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 197 KKKWLSKRTKTILTNVFTRSHNASDT 274
KK++L KRTK N + SHN T
Sbjct: 22 KKRFLKKRTKRNADNTYHPSHNKKST 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,723
Number of Sequences: 27780
Number of extensions: 236265
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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