Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0108.Seq
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 23/116 (19%), Positives = 46/116 (39%)
 Frame = +3

Query: 75  SNIEALETNGSCTYKRTYNNQ*RRKTTRHGQGIAEKLQSDRKRNGYQREPKRY*QMCLLG 254
           S+I  L+ +  C    ++     ++T   G G       +R  +G +    +     +LG
Sbjct: 462 SDITELDVSKRCKDLASFMGNLLQETRTPGFGKDVLATDERSFSGSRNPLLQEHDSVMLG 521

Query: 255 PITPAIQTARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSED 422
            I+P  +   +KS +E   ++     + N       K    T++ +  +II  S D
Sbjct: 522 EISPHHEYYDSKSSTETPPSYNQLNYNENIERFFKSKPPVATMYGSDEEIINSSND 577



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 224 KTILTNVFTRSHNAS 268
           +TI+++VFT  HNA+
Sbjct: 303 ETIISSVFTTRHNAT 317


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +3

Query: 408 TKSEDTRSTGGGHDLKTS------SDVKSKETPNEATHAGVMLKRKIDPN 539
           T +  T ST G   L  S      SDV+S  +      A ++LK +++PN
Sbjct: 227 TATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPN 276


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 224 KTILTNVFTRSHNAS 268
           +TI+++VFT  HNA+
Sbjct: 9   ETIISSVFTTRHNAT 23


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 153 LFCVVTDYYKFFC 115
           LF ++  YYK FC
Sbjct: 215 LFVMIQVYYKIFC 227


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 473 EQRNAKRSDPRWSHVKEKNRSESKKSQ 553
           E RN+ R+D   S  ++++R   KK +
Sbjct: 240 EDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 473 EQRNAKRSDPRWSHVKEKNRSESKKSQ 553
           E RN+ R+D   S  ++++R   KK +
Sbjct: 240 EDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 473 EQRNAKRSDPRWSHVKEKNRSESKKSQ 553
           E RN+ R+D   S  ++++R   KK +
Sbjct: 240 EDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 473 EQRNAKRSDPRWSHVKEKNRSESKKSQ 553
           E RN+ R+D   S  ++++R   KK +
Sbjct: 240 EDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 473 EQRNAKRSDPRWSHVKEKNRSESKKSQ 553
           E RN+ R+D   S  ++++R   KK +
Sbjct: 240 EDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 473 EQRNAKRSDPRWSHVKEKNRSESKKSQ 553
           E RN+ R+D   S  ++++R   KK +
Sbjct: 240 EDRNSYRNDGERSCSRDRSREYKKKDR 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,165
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)