Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0108.Seq
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6    29   2.5  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    29   3.3  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    28   4.3  
At3g52000.1 68416.m05704 serine carboxypeptidase S10 family prot...    28   5.7  
At5g46370.1 68418.m05707 outward rectifying potassium channel, p...    27   10.0 
At1g75100.1 68414.m08722 expressed protein low similarity to SP|...    27   10.0 
At1g38790.1 68414.m04709 hypothetical protein                          27   10.0 

>At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
          Length = 285

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 318 LNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGG--HDLKTSSDVKSKETPN 491
           L+ATVS N P    D++    V+ +   ++   +     GG    D K  S+ K+KE  +
Sbjct: 194 LDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGGPTVKDSKRESNFKTKEETD 253

Query: 492 E 494
           E
Sbjct: 254 E 254


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 938

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 538 FGSIFLFNMTPAWVASFGVSLLLTSLDVFK 449
           F  +  F   PAW ASFG+ +L   L+V K
Sbjct: 51  FARLLEFPNNPAWSASFGIFILGRQLEVTK 80


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 136 SDDAKQHGTVKALLRNFRVTEKEMAIKENQNDT 234
           +D+A+++ + K ++R+     KEMA K++Q D+
Sbjct: 882 ADEAEENRSAKEVIRSLTTQLKEMAEKQSQKDS 914


>At3g52000.1 68416.m05704 serine carboxypeptidase S10 family protein
           similar to SP|P52711 Serine carboxypeptidase II-3
           precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
           profile PF0450 serine carboxypeptidase
          Length = 482

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 216 FDSHFFFGHSEVSQQCLDRAVLFCVVTDYY 127
           F   F F H  +SQQ +D    FC  +D Y
Sbjct: 252 FGYKFMFSHGLISQQQMDNYNKFCTDSDLY 281


>At5g46370.1 68418.m05707 outward rectifying potassium channel,
           putative (KCO2) identical to KCO2 protein [Arabidopsis
           thaliana] gi|6686780|emb|CAB64717; similar to kco1
           [Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
           of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
           family, PMID:11500563
          Length = 443

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +3

Query: 264 PAIQTARTKSISEAKKAFLNATVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGGG 443
           P+  ++ T S S++    L     P   P KP ++ +PT+++ +           +    
Sbjct: 77  PSTSSSATTSFSDSTDLLL-----PLTEPNKPVRKSKPTINFHRSKTAPAMAAINNISHP 131

Query: 444 HDLKTSSDVKSKETPNEA 497
           +D KT     SK   N+A
Sbjct: 132 NDPKTDQQSDSKTIVNQA 149


>At1g75100.1 68414.m08722 expressed protein low similarity to
           SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
           sapiens}
          Length = 651

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
 Frame = +3

Query: 273 QTARTKSISEAKKAFLNATVSPN----APPTKPDKRIEPTVHYAQLDIITKSEDTRSTG- 437
           + +RTK  S+  K+ L+++  P+    A  +   +  +  V     D +       S G 
Sbjct: 370 EDSRTKKKSQGTKSSLDSSPIPDKSSFASSSAAPEVGKDGVKGKVSDFVKIFSKGASVGA 429

Query: 438 GGHDLKTSSDVKSKETP-NEATHAGVMLKRKID-PNQRKVS 554
           GG  L  SS  ++KETP  +  H G   K  ++ P+Q+K S
Sbjct: 430 GGESLGQSSRWRAKETPKTDIIHDGSNAKETVNIPDQQKKS 470


>At1g38790.1 68414.m04709 hypothetical protein
          Length = 150

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
 Frame = +3

Query: 270 IQTARTKSISEAKKAFLNA---TVSPNAPPTKPDKRIEPTVHYAQLDIITKSEDTRSTGG 440
           I+  RTK   +AK         T+       K D + +P   +     + +S        
Sbjct: 7   IKALRTKKKLDAKPMTHTDFCYTIKALRSTKKLDAKPKPHTDFGYTIKVLRSRKKLELEP 66

Query: 441 GHDLKTSSDVKSKETPNEATHAGVMLKRKIDPNQRKVSFKIKTAGTF 581
             DLK+ S V   E  N  TH       K   +++K+  K KT   F
Sbjct: 67  QLDLKSLSSVDLLEDTNSKTHTDFSYTIKASRSKKKLDTKSKTRTVF 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,728
Number of Sequences: 28952
Number of extensions: 210635
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)