Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0107.Seq
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    25   0.34 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    25   0.34 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   3.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   3.2  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   5.6  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 125 SHFTVKEKAILVKKLSLCLYYYKIRISRYVIN 30
           +H   K+K    K+ S C+Y Y +   RY++N
Sbjct: 109 AHLKDKKKIRAKKRWSQCMYMYFLLGFRYLVN 140


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 125 SHFTVKEKAILVKKLSLCLYYYKIRISRYVIN 30
           +H   K+K    K+ S C+Y Y +   RY++N
Sbjct: 423 AHLKDKKKIRAKKRWSQCMYMYFLLGFRYLVN 454


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 TLLSVHIVFRXVLN*NN 485
           TLLSV+ +FR   N NN
Sbjct: 66  TLLSVYSLFRIATNENN 82


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 TLLSVHIVFRXVLN*NN 485
           TLLSV+ +FR   N NN
Sbjct: 66  TLLSVYSLFRIATNENN 82


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 282 SERFTRNKIKFIDTMY 235
           S R +RN I+F+  MY
Sbjct: 2   SYRLSRNDIRFLKVMY 17


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,247
Number of Sequences: 336
Number of extensions: 2583
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)