Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0107.Seq
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37509| Best HMM Match : PAE (HMM E-Value=0)                         29   3.5  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         29   3.5  
SB_54815| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)             27   8.1  

>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
          Length = 483

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 549 VIHFQGGALCYPTYTCYRKNKS 484
           V+HF GGA CY    C +++K+
Sbjct: 119 VLHFFGGAWCYDEEACLQRSKT 140


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 549 VIHFQGGALCYPTYTCYRKNKS 484
           V+HF GGA CY    C +++K+
Sbjct: 888 VLHFFGGAWCYDEEACLQRSKT 909


>SB_54815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -3

Query: 122 HFTVKEKAILVKKLSLCLYYYKIRISRYVINSVVL 18
           +F  K+  +L+K+L+LC++      SRY + S+V+
Sbjct: 132 YFRPKKSDVLLKELALCIFGNLTEASRYNLPSLVM 166


>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
          Length = 327

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 561 CTKDVIHFQGGALCYPTYTCYRKNKSYFNLIPT*IQYVQTVVYL 430
           CT  VI +     C P+ TC    KSY N +P+       + YL
Sbjct: 46  CTAMVISYLN---CVPSKTCTAMVKSYLNCVPSKTCTAMVISYL 86



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 561 CTKDVIHFQGGALCYPTYTCYRKNKSYFNLIPT*IQYVQTVVYL 430
           CT  VI +     C P+ TC    KSY N +P+       + YL
Sbjct: 238 CTAMVISYLN---CVPSKTCTAMVKSYLNCVPSKTCTAMVISYL 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,779
Number of Sequences: 59808
Number of extensions: 232693
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)