Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0107.Seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   4.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   4.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   4.9  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 261 KIKFIDTMYSNGYMYILNYKGISIPDMSICEVKKRTTWF 145
           K  F D  Y    M     +G    +  + E+KK+TT F
Sbjct: 99  KASFDDEYYKRAPMGFQGMRGKKSLEEILDEIKKKTTRF 137


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 261 KIKFIDTMYSNGYMYILNYKGISIPDMSICEVKKRTTWF 145
           K  F D  Y    M     +G    +  + E+KK+TT F
Sbjct: 99  KASFDDEYYKRAPMGFQGMRGKKSLEEILDEIKKKTTRF 137


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 261 KIKFIDTMYSNGYMYILNYKGISIPDMSICEVKKRTTWF 145
           K  F D  Y    M     +G    +  + E+KK+TT F
Sbjct: 99  KASFDDEYYKRAPMGFQGMRGKKSLEEILDEIKKKTTRF 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,852
Number of Sequences: 438
Number of extensions: 2617
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)