Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0106.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   0.54 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   0.94 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.9  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    23   2.9  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    23   2.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.0  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.7  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 426 FVVLTVLSFFFIFLSYSNN--FQCLF 355
           FV+L  +SFF  F+ + NN  ++CL+
Sbjct: 140 FVILLWISFFLNFMLHCNNTTWRCLY 165


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 273 HLPLPSNRLYLQHLLATLNYVSNVTYLSLN 184
           H P PS+ +Y    L  LN + N++   +N
Sbjct: 344 HNPYPSHSIYPSSNLMPLNNIQNLSQSGIN 373


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 27  SCLFHNNQYINVILNKNNITL 89
           SC F N + +  + N NNI L
Sbjct: 248 SCTFDNLEELGPVCNSNNIWL 268


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 389 FYLILITFSAFFKINPVATVAP 324
           FY++  + S FFKI   +T+ P
Sbjct: 34  FYVVFSSVSTFFKIPFYSTLRP 55


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 389 FYLILITFSAFFKINPVATVAP 324
           FY++  + S FFKI   +T+ P
Sbjct: 34  FYVVFSSVSTFFKIPFYSTLRP 55


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 215 MCQMSLTCH*INWIGHS 165
           M  MSLT H I+ +GHS
Sbjct: 346 MMDMSLTRHQISSMGHS 362


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 225 LPANVVNIVDWRVEEG 272
           L ++V+ I+DW  E+G
Sbjct: 212 LSSHVITILDWTKEDG 227


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 215 MCQMSLTCH*INWIGHS 165
           M  MSLT H I+ +GHS
Sbjct: 346 MMDMSLTRHQISSMGHS 362


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 280 DGSPSSTLQSTIFTTFAGNTELCVKCHLLVIE 185
           D +PS   Q    T  +G T      HLLV++
Sbjct: 156 DYNPSQKRQFLHITLASGRTLTVTPSHLLVLD 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,320
Number of Sequences: 336
Number of extensions: 2949
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)