Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0106.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         28   7.5  
SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        28   7.5  
SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 39  HNNQYINVILNKNNITL*WNNILYTLNEQNGSLHVRH 149
           H++Q  N+I+N NNI +  NNI+   N  N ++ + +
Sbjct: 386 HHHQ--NIIINNNNIIINNNNIIINNNINNNNIIINN 420


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 192 TSK*HLTHNSVLPANVVNIVDWRVE--EGEPSLCAKKCP 302
           T +  +T+N   PA   N+ ++RV   + EP  C++ CP
Sbjct: 405 TQQNEITYNVTDPAGNENLCNFRVRVNDVEPPTCSRSCP 443


>SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 378 SNNFQCLF*N*PCCYCSATL 319
           +N  Q LF   PCCYC A L
Sbjct: 18  TNTHQALFYPHPCCYCEACL 37


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 383 DRKIKKNERTVSTTKAQKCILFI 451
           D+ IKK +R  +TTK  +C+L +
Sbjct: 256 DKPIKKTDRLTTTTKDDECVLVL 278


>SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 245 IYNICWQH*IMCQMSLT 195
           ++N+CW H I+C+  LT
Sbjct: 535 LHNLCWHHAILCRTVLT 551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,448
Number of Sequences: 59808
Number of extensions: 301740
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)