Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0106.Seq
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF209858-1|AAG43498.1|  321|Drosophila melanogaster LD14 protein.      28   9.5  
AE014298-1281|AAF46447.2|  321|Drosophila melanogaster CG12664-P...    28   9.5  
AB065095-1|BAB83666.1|  321|Drosophila melanogaster transmembran...    28   9.5  

>AF209858-1|AAG43498.1|  321|Drosophila melanogaster LD14 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 300 DTFSHTETVHLPLPSNRLYLQHLLATLNYVSNVTY 196
           D   H++ + +P P++R+Y+   L T + +  V Y
Sbjct: 230 DALEHSQHIRIPRPTDRVYIISALPTPSELGGVVY 264


>AE014298-1281|AAF46447.2|  321|Drosophila melanogaster CG12664-PB
           protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 300 DTFSHTETVHLPLPSNRLYLQHLLATLNYVSNVTY 196
           D   H++ + +P P++R+Y+   L T + +  V Y
Sbjct: 230 DALEHSQHIRIPRPTDRVYIISALPTPSELGGVVY 264


>AB065095-1|BAB83666.1|  321|Drosophila melanogaster transmembrane
           protein FEND protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 300 DTFSHTETVHLPLPSNRLYLQHLLATLNYVSNVTY 196
           D   H++ + +P P++R+Y+   L T + +  V Y
Sbjct: 230 DALEHSQHIRIPRPTDRVYIISALPTPSELGGVVY 264


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,816,150
Number of Sequences: 53049
Number of extensions: 421565
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)