Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0106.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    27   8.7  

>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 426 FVVLTVLSFFFIFLSYSNNFQ 364
           F++ T+LSFFF F+S SN FQ
Sbjct: 103 FILATILSFFF-FVSSSNTFQ 122


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 426 FVVLTVLSFFFIFLSYSNNFQ 364
           F++ T+LSFFF F+S SN FQ
Sbjct: 103 FILATILSFFF-FVSSSNTFQ 122


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 194 CH*INW-IGHSKVLQVMSYVQTSILFIQCV*NIIPL 90
           C+ I W +G +K+L  MS++QT++   + +  IIPL
Sbjct: 98  CYAITWTVGAAKML--MSFIQTALTIERIIDRIIPL 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,603
Number of Sequences: 27780
Number of extensions: 245502
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)