Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0105.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.1  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.4  

>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 184 ILKLTSREITSNIPESLSRVTVPHH 258
           ILKLT +  + N+P  +    +PHH
Sbjct: 218 ILKLTEKYSSQNVPFDVYAAQIPHH 242


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 509 KFVLFCDCLCENINFFHSQG 568
           +FV FC  +C+ I + HS+G
Sbjct: 124 EFVRFCIAICKCIEYLHSKG 143


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 123 GFSDTFKMPEIPEIKSLEFDDIKTHVA 203
           GFSD  ++ E P    + +DDI +H A
Sbjct: 919 GFSDINEIKEHPFFNGINWDDIFSHEA 945


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,992
Number of Sequences: 5004
Number of extensions: 44173
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)