Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0105.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0610 + 24335153-24337724,24337835-24338256                       30   1.8  
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    29   3.2  
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    29   4.2  
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    28   7.4  
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647...    27   9.7  
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431...    27   9.7  

>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 166 SLLNLMILKLTSREITSNIPESLSR 240
           +L  L+ LKLTS ++T NIP +L R
Sbjct: 481 NLRQLVYLKLTSNKLTGNIPNALDR 505


>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
            525209-525401,525978-526330,526693-526791,526864-526935,
            527062-527213,527338-527386,527755-527885,528067-528307,
            528392-528565,528656-528797,529236-529282,529370-529450,
            530170-530271,530345-530440,531437-531444,531575-531616,
            531830-531894,534761-534853,534888-534959,535303-535509,
            536318-537226,537503-538158
          Length = 1429

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 93   VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDD 185
            +W+ DDD FP     F+   IP+  S +FDD
Sbjct: 1072 IWDSDDD-FPNEEKHFRTQIIPKDLSQDFDD 1101


>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  EDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTG 227
           E + D  P   +T   PE PE  S++ +  K + A DNE+Y G
Sbjct: 413 EVEQDQMPPVQETLHNPE-PE--SIDIEPPKENTADDNERYVG 452


>11_06_0109 +
           20202629-20205452,20206354-20206578,20207208-20208091,
           20208692-20208814
          Length = 1351

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 169 LLNLMILKLTSREITSNIPESLSRVTVPHH 258
           L  L IL+L+    + +IP S++++T  HH
Sbjct: 725 LTELQILRLSHNSFSGDIPRSITKLTNLHH 754


>04_01_0492 +
           6476586-6476873,6477414-6477686,6477769-6477948,
           6478436-6478696,6479171-6479303,6479404-6479494,
           6479921-6480023,6480557-6480660,6480809-6480902,
           6480985-6481140,6481224-6481286,6481388-6481453,
           6481670-6481870,6481999-6482076,6482165-6482284,
           6482382-6482462,6482548-6482633,6482920-6483031,
           6483093-6483170,6483306-6483482
          Length = 914

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 93  VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQY 221
           VW+DD  L  G+  + K+  I    S   + I+  +   NE+Y
Sbjct: 245 VWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKY 287


>01_06_0445 -
           29441472-29442152,29442244-29442357,29442959-29443186,
           29443284-29443586
          Length = 441

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 162 SLVSLAS*TYLRIPGTNRHRPPIQSQRS 79
           S +SL      R+ G   H+PP+Q QRS
Sbjct: 357 SYMSLTKSAKARLSGYGSHKPPLQRQRS 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,546,378
Number of Sequences: 37544
Number of extensions: 236731
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)