Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0105.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52747| Best HMM Match : Semialdhyde_dh (HMM E-Value=6.5)            29   4.3  
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_19324| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_52747| Best HMM Match : Semialdhyde_dh (HMM E-Value=6.5)
          Length = 144

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 35  GVYEVSFCDYINYNRERWLCMGGR*RFVPGILRYVQDARDTRD 163
           G++++S C Y +  +E WLC+    +   G+L  + D + +RD
Sbjct: 90  GIFKISGCFYFDTPKEGWLCVQYNIQ-SGGVLYAMDDEKASRD 131


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 106  MTICSRDSQIRSRCQRYQR*SLLNLMILKLTSREITSNIPESLSRVTV 249
            MT+C   +Q+      ++R  LLN  +  +TS E+T+N+  S+ RV V
Sbjct: 1119 MTMCDVMNQLMEWRAAHERTLLLNADMSDVTSAEVTANL--SIIRVLV 1164


>SB_19324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 391 IFLFVNNRWIYLIAIFVFHDLFFDGFSVIC 302
           + L+ N   +Y  + FVFHDL+F  ++ IC
Sbjct: 138 VLLYCNITLVY--SNFVFHDLYFFYYTTIC 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,372,818
Number of Sequences: 59808
Number of extensions: 296993
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)