Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0105.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93391-5|CAB07686.3|  387|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF188749-1|AAF00546.1|  335|Caenorhabditis elegans putative tyro...    28   6.6  
Z81055-8|CAB02896.2|  409|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z93391-5|CAB07686.3|  387|Caenorhabditis elegans Hypothetical
           protein W04G5.6 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 534 KQSQNNTNLTKKELITVNLTIQCRDEKH 451
           K+S NN ++++K+L+   L + C  +KH
Sbjct: 115 KESSNNHDISQKKLVYEELKVMCGMKKH 142


>AF188749-1|AAF00546.1|  335|Caenorhabditis elegans putative
           tyrosine kinase receptorW04G5.6A protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 534 KQSQNNTNLTKKELITVNLTIQCRDEKH 451
           K+S NN ++++K+L+   L + C  +KH
Sbjct: 62  KESSNNHDISQKKLVYEELKVMCGMKKH 89


>Z81055-8|CAB02896.2|  409|Caenorhabditis elegans Hypothetical
           protein F01G10.7 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 349 IFVFHDLFFDGFSVICQLANSAAAHCLAVDRGEEL 245
           +F+ H L  DGFS I  LAN +A    A D G ++
Sbjct: 75  VFMQHGLLADGFSWIPNLANQSAGFVFA-DAGFDI 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,663
Number of Sequences: 27780
Number of extensions: 241207
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)