Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0105.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.63 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   3.4  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 147 PEIP-EIKSLEFDDIKTHVA-GDNEQYTGE 230
           PEI  E++ +E+DDIKT ++ G N+    E
Sbjct: 290 PEIKKEVEDMEYDDIKTELSTGMNDDIPPE 319


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 69   ITIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 191
            I++A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1856 ISVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1895


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 69   ITIASAGFVWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIK 191
            I++A   FV  +  ++ PG  D    PE+ E +  + D +K
Sbjct: 1852 ISVAETTFVGGNQGNVVPGNGDRSDRPELSEAE-CDIDSLK 1891


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 546 IFSHKQSQNNTNLTKKEL 493
           +FSH    NN NL ++EL
Sbjct: 241 MFSHYDRNNNGNLEREEL 258


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +2

Query: 458 SSLHCIVKFT---VISSFFVKFVLFCDC 532
           S L CI  F    +I+S+FV  V+ C+C
Sbjct: 3   SMLRCIYLFLSVILITSYFVTPVMPCNC 30


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 509 KFVLFCDCLCENIN 550
           K  L+C+C+ +N N
Sbjct: 58  KVQLYCECILKNFN 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,949
Number of Sequences: 438
Number of extensions: 2828
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)