Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0105.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote...    31   0.66 
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    31   0.66 
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont...    28   4.7  
At3g05360.1 68416.m00584 disease resistance family protein / LRR...    28   6.1  
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont...    28   6.1  

>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 694

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 166 SLLNLMILKLTSREITSNIPESLSRVT 246
           SLL L +L L+S  IT  IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 166 SLLNLMILKLTSREITSNIPESLSRVT 246
           SLL L +L L+S  IT  IPESL+R++
Sbjct: 124 SLLTLEVLDLSSCSITGTIPESLTRLS 150


>At3g53240.1 68416.m05868 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 891

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 133 IRSRCQRYQR*SLLNLMILKLTSREITSNIPESL 234
           ++ R   Y R +L  +  L L+S E++ NIPE L
Sbjct: 689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEEL 722


>At3g05360.1 68416.m00584 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to
           elicitor-inducible LRR receptor-like protein EILP
           [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
           Cf-2.2 [Lycopersicon pimpinellifolium]
           gi|1184077|gb|AAC15780
          Length = 786

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 169 LLNLMILKLTSREITSNIPESLSRVT 246
           L  L +L L+    TSNIP+SL+ +T
Sbjct: 621 LKELRLLNLSGNSFTSNIPQSLANLT 646


>At1g80080.1 68414.m09374 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 496

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 169 LLNLMILKLTSREITSNIPESLSRV 243
           L NLMIL L++  I  +IP+SL+R+
Sbjct: 326 LKNLMILVLSNTNIQGSIPKSLTRL 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,169
Number of Sequences: 28952
Number of extensions: 213869
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)