Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0104.Seq
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 136 1e-33
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 136 1e-33
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 74 9e-15
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 72 4e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 41 1e-04
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.066
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 27 1.1
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 1.1
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 1.1
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 1.9
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 2.5
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 4.4
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 4.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.6
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 7.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 7.6
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 25 7.6
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 7.6
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 136 bits (330), Expect = 1e-33
Identities = 64/87 (73%), Positives = 69/87 (79%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
EGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVV YRE
Sbjct: 506 EGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRE 565
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
+V E S LSKSPNKHNR+FM P
Sbjct: 566 SVSEPSSMTALSKSPNKHNRIFMTAEP 592
Score = 51.2 bits (117), Expect = 8e-08
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +1
Query: 256 QPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAP 399
+PM + L I+ G VNPRDDFK RAR + + + +DVT+AR P
Sbjct: 591 EPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGP 638
Score = 44.8 bits (101), Expect = 7e-06
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSKGVQYLNE 458
IWCFGP+ TG N++VD +K V YLNE
Sbjct: 633 IWCFGPDTTGANVVVDQTKAVAYLNE 658
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 136 bits (330), Expect = 1e-33
Identities = 64/87 (73%), Positives = 69/87 (79%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
EGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVV YRE
Sbjct: 506 EGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRE 565
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
+V E S LSKSPNKHNR+FM P
Sbjct: 566 SVSEPSSMTALSKSPNKHNRIFMTAEP 592
Score = 51.2 bits (117), Expect = 8e-08
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +1
Query: 256 QPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAP 399
+PM + L I+ G VNPRDDFK RAR + + + +DVT+AR P
Sbjct: 591 EPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGP 638
Score = 44.8 bits (101), Expect = 7e-06
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSKGVQYLNE 458
IWCFGP+ TG N++VD +K V YLNE
Sbjct: 633 IWCFGPDTTGANVVVDQTKAVAYLNE 658
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 74.1 bits (174), Expect = 9e-15
Identities = 37/72 (51%), Positives = 46/72 (63%)
Frame = +2
Query: 5 GLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRET 184
GL L ++DP VQ EE+GEH++ AGE+HLE CLKDL E A I I+ S P+V YRET
Sbjct: 582 GLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERFAKIEIQASQPLVPYRET 641
Query: 185 VXEESDQLCLSK 220
D L +K
Sbjct: 642 TIATPDLLAKNK 653
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSK 437
I FGP+ GPNIL D +K
Sbjct: 751 IIAFGPKRVGPNILFDKTK 769
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 72.1 bits (169), Expect = 4e-14
Identities = 36/87 (41%), Positives = 52/87 (59%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
+GL++ KS P+ EESGEH + G GE++++ L DL ++ I I+ SDPV + E
Sbjct: 618 DGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARFCE 677
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
T + S C S +PNK NR+ M V P
Sbjct: 678 TAVDTSSIKCFSDTPNKKNRITMVVEP 704
Score = 31.9 bits (69), Expect = 0.050
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 256 QPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAP 399
+P+ G+ DI+ G+VN K + + + Y++D+ +R A P
Sbjct: 703 EPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGP 750
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 372 SPXIWCFGPEGTGPNILVD 428
S IW FGP+ G NIL D
Sbjct: 742 SRSIWAFGPDDRGTNILRD 760
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 40.7 bits (91), Expect = 1e-04
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYR 178
+ L R + DP + ++ ES E I++G GELHLE+ ++ + ++ + + P V +R
Sbjct: 492 KALNRFQREDPTFRVQLDNESKETIISGMGELHLEVYVERMRREYK-VDCETGKPRVAFR 550
Query: 179 ETVXEE 196
ET+ ++
Sbjct: 551 ETLSKK 556
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 31.5 bits (68), Expect = 0.066
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINE-ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYR 178
E L + + DP + + E+G+ ++ G G +HL++ + L + V YR
Sbjct: 462 EALANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERLVSEFGA-RASLGKVQVGYR 520
Query: 179 ETVXEESDQLCLSKSPNKHN 238
ET+ + S + NK N
Sbjct: 521 ETLIDVSFNSVTLSTENKEN 540
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 333 SASLEVIAGIHATLINVLWQTIRHGLTFMNRRLCLLGD 220
S+ + GIH+++ ++ + + TF N LC+LG+
Sbjct: 102 SSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGE 139
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 1.1
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 140 IPIKKSDPVVXYRETVXEESDQLCLSKSPNKHNRLFMKVSPCLMVCQRTLMRVA*IPAMT 319
+P+ +D VV + E + L K PN ++ K+ + + L A +PAM
Sbjct: 417 LPLSYTDEVVKFIEK-NTQGHSLESKKEPNLESQSSNKIKTTIFPVSQLLFSNANVPAMC 475
Query: 320 SRLALGILQKXTNTMLPKPVD 382
RL + +N + K +D
Sbjct: 476 QRLR-SLNNTKSNPLPAKSID 495
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 176 RETVXEESDQLCLSKSPNKHNRLFMKVSPCL 268
R T EE + L+KSP+ HNR+ ++P +
Sbjct: 466 RLTDDEEREIRALAKSPDIHNRIIASMAPSI 496
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 1.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 195 SSXTVSRYXTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGS 28
S T Y TTG+D ++ SS R WS+ P +P ++ I+ T GS
Sbjct: 117 SDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSGS 169
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 274 LPEDIDEGRVNPRDDFKT 327
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 93 SSPAPATMCSPDSSL--IHCTMGSDLARRLRPS 1
S+ +P+T+CSPD+++ ++ G L ++ P+
Sbjct: 403 SNVSPSTICSPDNNVTFVNLAPGEKLTFKIEPN 435
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 394 PKHQIXGLR*HRIRXFL*DTERES 323
PKH++ LR HRI FL R S
Sbjct: 241 PKHKLTKLRSHRIATFLKGISRRS 264
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 35 MVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 151
M + IN +S + +E CL L+E H +P++
Sbjct: 1 MKEMINLDSSSEPSIVTKQFSVEECLSKLKEQHCYVPMR 39
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 393 GPEGTGPNILVD--CSKGVQYLNE 458
GP G+G ++LVD S+ Q +NE
Sbjct: 582 GPRGSGKSVLVDDILSRAAQEINE 605
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +1
Query: 214 LKVAQQAQPSIHEGQPMPDGLPEDIDEGRVNPRDDFKTRARYL 342
L + P+ +P PDG P + P D K +R L
Sbjct: 366 LSIPSTLPPADGVPKPTPDGFPRRFERDPTIPPDSIKVYSRTL 408
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 319 FKTRARYLTEXYEYDVTEA 375
F++R RYLT YE+ V +A
Sbjct: 1068 FESRRRYLTNLYEHIVLKA 1086
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 11 KRLAKSDPMVQCINEESGEHIVAGAGEL 94
KR A + +V C+NE E +A A EL
Sbjct: 83 KRAAIAQQLVNCVNELFYEEALARAAEL 110
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 336 PSASLEVIAGIHATLINVLWQTIRHGLT 253
P ASLE + + TLIN ++ +R T
Sbjct: 468 PRASLETLCSLCVTLINDTFEPVRMATT 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,536
Number of Sequences: 5004
Number of extensions: 37403
Number of successful extensions: 130
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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