Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0104.Seq
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 123 6e-29
04_01_0103 + 1082077-1082167,1083037-1085477 122 1e-28
02_04_0017 + 18937774-18937864,18938505-18940945 122 1e-28
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 114 3e-26
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 84 6e-17
03_05_0511 + 25056018-25059107 70 8e-13
02_04_0148 - 20198407-20201424 65 2e-11
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 47 7e-06
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 40 0.001
12_02_0788 - 23152810-23152975,23153618-23153862,23154529-23154723 35 0.028
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109... 29 1.9
10_08_0081 + 14710478-14710822 28 3.3
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 28 4.3
02_02_0340 + 9135846-9138377 28 4.3
03_02_0620 + 9916684-9917336,9919219-9919492,9920502-9920585,992... 27 5.7
04_01_0259 + 3422055-3422462,3499540-3499671 27 7.5
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 27 7.5
09_06_0304 - 22154086-22154364,22154679-22155058,22155763-22156183 27 10.0
08_01_0314 + 2777971-2778607,2778809-2778885,2778964-2779011 27 10.0
06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832 27 10.0
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 123 bits (297), Expect = 6e-29
Identities = 61/88 (69%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVXYR 178
EGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S PVV +R
Sbjct: 502 EGLKRLAKSDPMVLCTVEESGEHIIAGAGELHLEICLKDLQEDFMGGAEITVSPPVVSFR 561
Query: 179 ETVXEESDQLCLSKSPNKHNRLFMKVSP 262
ETV E+S + +SKSPNKHNRL+M+ P
Sbjct: 562 ETVLEKSCRTVMSKSPNKHNRLYMEARP 589
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +1
Query: 250 EGQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAPRVPAP 414
E +PM +GLPE IDEGR+ PRDD K R++ L+E + +D A+ P P
Sbjct: 586 EARPMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGP 640
Score = 54.4 bits (125), Expect = 4e-08
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSKGVQYLNE 458
IWCFGPE TGPNI+VD KGVQYLNE
Sbjct: 630 IWCFGPETTGPNIVVDMCKGVQYLNE 655
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 122 bits (295), Expect = 1e-28
Identities = 61/88 (69%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVXYR 178
EGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S PVV +R
Sbjct: 506 EGLKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFR 565
Query: 179 ETVXEESDQLCLSKSPNKHNRLFMKVSP 262
ETV E+S + +SKSPNKHNRL+M+ P
Sbjct: 566 ETVLEKSCRTVMSKSPNKHNRLYMEARP 593
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSKGVQYLNE 458
IWCFGPE TGPN++VD KGVQYLNE
Sbjct: 634 IWCFGPETTGPNMVVDMCKGVQYLNE 659
Score = 50.0 bits (114), Expect = 9e-07
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 250 EGQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAPRVPAP 414
E +P+ +GL E ID+GR+ PRDD K R++ L+E + +D A+ P P
Sbjct: 590 EARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGP 644
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 122 bits (295), Expect = 1e-28
Identities = 61/88 (69%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVXYR 178
EGLKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S PVV +R
Sbjct: 506 EGLKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFR 565
Query: 179 ETVXEESDQLCLSKSPNKHNRLFMKVSP 262
ETV E+S + +SKSPNKHNRL+M+ P
Sbjct: 566 ETVLEKSCRTVMSKSPNKHNRLYMEARP 593
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSKGVQYLNE 458
IWCFGPE TGPN++VD KGVQYLNE
Sbjct: 634 IWCFGPETTGPNMVVDMCKGVQYLNE 659
Score = 50.0 bits (114), Expect = 9e-07
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 250 EGQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAPRVPAP 414
E +P+ +GL E ID+GR+ PRDD K R++ L+E + +D A+ P P
Sbjct: 590 EARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGP 644
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 114 bits (275), Expect = 3e-26
Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVXYR 178
EGLKRLAKSDP+V C EESGEH++AG G+LHLEIC+KDL+ED I P++ YR
Sbjct: 508 EGLKRLAKSDPLVVCTIEESGEHVIAGVGQLHLEICIKDLQEDFMGGAEIIVGPPIITYR 567
Query: 179 ETVXEESDQLCLSKSPNKHNRLFMKVSP 262
ETV + S + +SKSPNKHNRL+M+ P
Sbjct: 568 ETVTKNSCRTVMSKSPNKHNRLYMEARP 595
Score = 46.8 bits (106), Expect = 9e-06
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSKGVQYLNE 458
IW FGPE GPN+LVD KGVQYL+E
Sbjct: 644 IWAFGPETKGPNLLVDMCKGVQYLSE 669
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 217 KVAQQAQPSIHEG-QPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGAL 393
++ +A+P E Q L + ID+ R+ P+DD K R + L+E + +D A+ A
Sbjct: 588 RLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKDDIKERGKILSEEFGWDKDLAKKIWAF 647
Query: 394 APRVPAP 414
P P
Sbjct: 648 GPETKGP 654
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 83.8 bits (198), Expect = 6e-17
Identities = 37/87 (42%), Positives = 58/87 (66%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
EGL++++KS P+ EESGEH + G GEL+L+ +KDL E ++ + +K +DPVV + E
Sbjct: 629 EGLRKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVTFCE 688
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
TV + S C +++PNK N++ M P
Sbjct: 689 TVVDTSSMKCFAETPNKRNKITMVAEP 715
Score = 34.7 bits (76), Expect = 0.038
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 256 QPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAPRVPAP 414
+P+ GL EDI+ G V+ K + + Y++DV AR A P P
Sbjct: 714 EPLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPEKQGP 766
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVDCSKGVQ 446
IW FGPE GPNIL+D + V+
Sbjct: 756 IWAFGPEKQGPNILLDDTLSVE 777
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 70.1 bits (164), Expect = 8e-13
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
+GLK L ++DP V+ + GEH++A AGE+HLE C KDLEE A + + SDP+V ++E
Sbjct: 555 KGLKLLNRADPFVEYTVSQRGEHVLAAAGEIHLERCKKDLEERFAKVKLVVSDPLVSFKE 614
Query: 182 TVXEESDQLCLS-KSPNK 232
T+ E L S K+P +
Sbjct: 615 TIEGEGLALIESLKAPRE 632
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 65.3 bits (152), Expect = 2e-11
Identities = 27/65 (41%), Positives = 46/65 (70%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
+GLK L ++DP ++ E GEH++A AGE+HLE C+K+L+E A + ++ S P+V +++
Sbjct: 535 KGLKLLNQADPFIEYTVSERGEHVLAAAGEIHLEHCIKNLQERFARVQLEVSKPLVSFKD 594
Query: 182 TVXEE 196
T+ E
Sbjct: 595 TIQGE 599
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 318 LQDSRSVSYRKXRIRCYRSPXIWCFGPEGTGPNILV 425
L D ++ SYRK I + IW GP GPN+L+
Sbjct: 696 LDDEKTESYRKMLIGYLQR--IWALGPLQVGPNLLL 729
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 47.2 bits (107), Expect = 7e-06
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYR 178
+ L R K DP + ++ ESGE I++G GELHL+I ++ + ++ + K P V +R
Sbjct: 496 KALNRFQKEDPTFRVGLDPESGETIISGMGELHLDIYVERIRREYK-VDAKVGKPRVNFR 554
Query: 179 ETVXEESD 202
ET+ + ++
Sbjct: 555 ETITQRAE 562
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 GLKRLAKSDPMVQCI-NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
GL +LA+ DP +EE+ + ++ G GELHL+I + L+ + + P V YRE
Sbjct: 477 GLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRLKREFR-VEANVGAPQVNYRE 535
Query: 182 TVXEESD 202
++ + S+
Sbjct: 536 SISKISE 542
>12_02_0788 - 23152810-23152975,23153618-23153862,23154529-23154723
Length = 201
Score = 35.1 bits (77), Expect = 0.028
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = -2
Query: 399 RGQSTKSTGFGNIVFVXFCKIPSASLEVIAGIHATLINVLWQTIRHGLTFMNRRLCLLGD 220
RG GFG ++ C I S + EV + + I G +F+ ++ +G
Sbjct: 50 RGSVDFIFGFGRSLYAD-CTIESVTKEVAVVTAQQRSKNIAEAIDTGFSFLRCKISGIGQ 108
Query: 219 -FERQSWSDSSXTVSRYXTTGSDFL-IGMQAW 130
+ ++W DSS V Y T G + + IG W
Sbjct: 109 IYLGRAWGDSSRVVYSYTTMGKEVVPIGWDGW 140
>07_01_0154 -
1094256-1094672,1094954-1094977,1095867-1095891,
1096014-1096304,1096391-1096470,1096953-1097052,
1097143-1097204,1097650-1097750,1097940-1098117,
1098298-1098924,1099014-1099100,1099804-1099905,
1100265-1100348,1100580-1100657
Length = 751
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 209 CLSKSPNKHNRLFMKVSPCLMVCQRTL 289
C KS NKH +LF+ CL+ +RTL
Sbjct: 553 CHKKSKNKH-KLFLNAKACLLSLKRTL 578
>10_08_0081 + 14710478-14710822
Length = 114
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 228 LGDFERQSWSDSSXTVSRYXTTGSDFLIGMQAWSS-SRSLRQISRWSSPAPAT 73
+ R SWSD V+R T+ + + W+ R +R S WSS AP T
Sbjct: 1 MSHLRRLSWSDQ--VVARQPTSEEEDVDAGGRWTEVRRKVRPHSWWSSNAPTT 51
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 27.9 bits (59), Expect = 4.3
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = -2
Query: 381 STGFGNIVFVXFCKIPSASLEVIAGIHATLINVLWQTIRHGLTFMNRRLCLLGDFERQSW 202
S G G I ++ +I S++ +AG ATL N W T G+T M L L SW
Sbjct: 359 SFGMGAIPWIIMSEILPVSIKSLAGSFATLAN--WLT-SFGIT-MTANLML-------SW 407
Query: 201 SDSSXTVSRYXTTGSDFLIGMQAW---SSSRSLRQISRWS 91
S VS Y + L+ + W + R+L +I +WS
Sbjct: 408 SAGGTFVS-YMVVSAFTLVFVILWVPETKGRTLEEI-QWS 445
>02_02_0340 + 9135846-9138377
Length = 843
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 168 TTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCS 64
TTGSD L G+Q + R+L I+ P +CS
Sbjct: 801 TTGSDVLDGLQPHYNLRALGIINHGGPTGPGWLCS 835
>03_02_0620 +
9916684-9917336,9919219-9919492,9920502-9920585,
9921295-9921356,9921699-9921762
Length = 378
Score = 27.5 bits (58), Expect = 5.7
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Frame = -2
Query: 447 TELLWSNPPGCWGRYPRGQSTKSTG----FGNIVFVXFCK---IPSASLEVIAGIHATLI 289
+ +LW P WGRYP + KS +V + K IPS EV+A + T+
Sbjct: 288 SSVLWD--PERWGRYPTSEPDKSQDSVKFVQQVVLEDYSKVRGIPSDCSEVMAKLR-TVS 344
Query: 288 NVLWQTIRHGLTFMNRRL 235
L T R L +N L
Sbjct: 345 QQLEATWRSALAIINELL 362
>04_01_0259 + 3422055-3422462,3499540-3499671
Length = 179
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = +1
Query: 202 PALSLKVAQQAQPSIHEGQPMPDGLPEDIDEGRVNP---RDDFKTRAR---YLTEXYEYD 363
P L V++ +PS E QP P + IDE P ++ +T R + ++ D
Sbjct: 25 PQLEASVSKIEEPSTIESQPEPSTSTDSIDEKVPEPSVETEEIQTPDRAAIMFRDGFDED 84
Query: 364 V-TEARXFGALAPRVPAP 414
FG P VP P
Sbjct: 85 YGNTLNYFGKKKPLVPLP 102
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 191 EESDQLCLSKSPNKHNRLFMKVSPCLMVCQRTLMRVA*-IPAMTSRLALGILQKXTNTML 367
EE D + N +L + V P Q++L R++ +P R +L +LQK TN+
Sbjct: 376 EEKDTKSVCSKENNGEQLVLGVGPV----QKSLWRLSKLVPLEGVRKSLSVLQKQTNSFG 431
Query: 368 PKPVDL 385
P L
Sbjct: 432 KAPSQL 437
>09_06_0304 - 22154086-22154364,22154679-22155058,22155763-22156183
Length = 359
Score = 26.6 bits (56), Expect = 10.0
Identities = 19/90 (21%), Positives = 39/90 (43%)
Frame = -2
Query: 318 VIAGIHATLINVLWQTIRHGLTFMNRRLCLLGDFERQSWSDSSXTVSRYXTTGSDFLIGM 139
V +G T IN + +G+T N + ++ + +W +S + G+ L G+
Sbjct: 269 VYSGPCGTRINHAVLAVGYGVTLNNTKYWIVKNSWNTTWGESGYIRMKRDVGGNKGLCGI 328
Query: 138 QAWSSSRSLRQISRWSSPAPATMCSPDSSL 49
+ + + S +S+ A A D++L
Sbjct: 329 AMYGIYPTKTKTSTFSAAARAASVIADAAL 358
>08_01_0314 + 2777971-2778607,2778809-2778885,2778964-2779011
Length = 253
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 101 EICLKDLEEDHACIPIKKSDPVVXYRETVXEESD 202
E+CL+D++ +P P++ + E+SD
Sbjct: 174 ELCLQDVDVGGVFVPCSSDHPIIHLADLPPEQSD 207
>06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832
Length = 118
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 193 GIGPALSLKVAQQAQPSIHEGQPMPDGLPEDIDEGRVNPRD 315
G+ L++ + P E +P P P D D R PRD
Sbjct: 40 GLSIELTIHAVVRPLPPSSESKPPPAVTPSDDDPSRHGPRD 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,604,287
Number of Sequences: 37544
Number of extensions: 284225
Number of successful extensions: 911
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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