Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0104.Seq
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   157   6e-39
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   1e-15
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 54   6e-08
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.36 
SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)                      29   1.5  
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     29   1.5  
SB_35454| Best HMM Match : SRP-alpha_N (HMM E-Value=6.1)               29   1.9  
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)                     28   3.4  
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)               28   3.4  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   3.4  
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)                28   3.4  
SB_41351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   4.4  
SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)                      28   4.4  
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   5.9  
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)           27   7.7  
SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)                    27   7.7  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  157 bits (380), Expect = 6e-39
 Identities = 71/87 (81%), Positives = 77/87 (88%)
 Frame = +2

Query: 2   EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
           EGL RLAKSDPMVQ   EESGEHIVAGAGELHLEICLKDLEEDHACIP+KKS+PVV YRE
Sbjct: 496 EGLNRLAKSDPMVQSFTEESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSYRE 555

Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
            V ++S+Q+CLSKSPNKHNRLFM   P
Sbjct: 556 CVSDKSNQMCLSKSPNKHNRLFMTAGP 582



 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +1

Query: 259 PMPDGLPEDIDEG-RVNPRDDFKTRARYLTEXYEYDVTEARXFGALAPRVPAP 414
           P+ + LPEDID+G  +NPR DFK RARYL + Y +DV EAR   +  P    P
Sbjct: 582 PLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGTGP 634



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +3

Query: 381 IWCFGPEGTGPNILVDCSKGVQYLNE 458
           IW FGPEGTGPN+LVD SKGVQYLNE
Sbjct: 624 IWSFGPEGTGPNLLVDVSKGVQYLNE 649


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 36/87 (41%), Positives = 57/87 (65%)
 Frame = +2

Query: 2   EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
           +GL+++ KS P++    EESGEH++ G GEL+L+  + DL   ++ I IK +DPV+ + E
Sbjct: 473 DGLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCE 532

Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
           TV E S   C +++PNK N++ M   P
Sbjct: 533 TVVETSSLKCFAETPNKKNKVTMIAEP 559



 Score = 36.7 bits (81), Expect = 0.010
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +3

Query: 381 IWCFGPEGTGPNILVD 428
           IW FGPE TGPNILVD
Sbjct: 600 IWAFGPENTGPNILVD 615


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +2

Query: 65  EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRETV 187
           EH++  AGE+HL+ C+ DL+  +AC+ +  SDP++ +RETV
Sbjct: 2   EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42



 Score = 33.9 bits (74), Expect = 0.068
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 381 IWCFGPEGTGPNILVD 428
           IW FGP GTGPNIL++
Sbjct: 182 IWAFGPRGTGPNILLN 197


>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1602

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 353 TNTMLPKPVDLVLWPRGYRPQHPGGL 430
           T TM PK +D +L P  Y P HP  L
Sbjct: 34  TTTMTPKTIDRLLRPMYYDPNHPAAL 59


>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 2   EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 106
           + + R  + DP  +   ++ES E I++G GELHL++
Sbjct: 42  KAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77


>SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 344 QKXTNTMLPKPVDLVLWPRGYRPQHPGGL 430
           +K T TM  K +D +L P  Y P HP  L
Sbjct: 7   KKTTTTMTQKTIDRLLRPIYYDPNHPAAL 35


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 32  PMVQCINEESGEHIVAGAGELHLEICLKDLEE 127
           P  Q + E   EH+VA +G+L  E C K L +
Sbjct: 26  PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57


>SB_35454| Best HMM Match : SRP-alpha_N (HMM E-Value=6.1)
          Length = 211

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 226 QQAQPSIHEGQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTE-ARXFGALAPR 402
           +  +PS  + QP P GL    ++  +   +++ + +    +    D  E ++  G+L  R
Sbjct: 90  ESVRPSFPDTQPGPAGLDLGEEDDIIEIEEEYVSLSMTKKKSDVKDTAEDSKSIGSLFSR 149

Query: 403 VPAPTSW 423
           +P P SW
Sbjct: 150 MPKPWSW 156


>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 20  AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEEDH 133
           AK DP +    C NE+SGEH  +  GE +L I ++ +++D+
Sbjct: 7   AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKDY 46


>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
          Length = 1557

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 347 KXTNTMLPKPVDLVLWPRGYRPQHPGGL 430
           K    M PK +D +L P  Y P HP  L
Sbjct: 29  KKKTMMTPKTIDRLLRPMYYDPNHPAAL 56


>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
          Length = 1037

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 223 AQQAQPSIHEGQPMPDGLPEDIDEGRVNPR 312
           AQ+ +   H  + +P  +P D D GR NP+
Sbjct: 636 AQRRRSLAHSARSLPGSMPSDRDLGRKNPQ 665


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 27/108 (25%), Positives = 45/108 (41%)
 Frame = -2

Query: 339  IPSASLEVIAGIHATLINVLWQTIRHGLTFMNRRLCLLGDFERQSWSDSSXTVSRYXTTG 160
            +P+A   +++ +  TL   +W  I H  TF         D  + S ++   +   + TT 
Sbjct: 1157 LPTAFSNLLSHVSQTLSPSIWNNISHPSTFN-------PDMPKPSTNNDPVSQPLFITTP 1209

Query: 159  SDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGSDLAR 16
                  +   +S+ S    S  +SP P T  S  SS     +GS LA+
Sbjct: 1210 GALFTPLPHETSATSPPYTS--ASPVPTTTPSASSSPTISPIGSSLAQ 1255


>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
          Length = 348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 217 KVAQQAQPSIHEGQPMPDGLPEDIDEGRVNP-RDDFKTRAR 336
           KV ++    + +G+ +PDGLPE+  +   +   D F TR R
Sbjct: 49  KVKEKVDQKLTKGKDIPDGLPEETSKKLFSAFADKFCTRIR 89


>SB_41351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +1

Query: 220 VAQQAQPSIHEGQPMPDGLPEDIDEGRVNPRDDFKTRARYL-----TEXYEYDVTEARXF 384
           +A+Q +   HE  P  D + E   E R    +  K+R         +E YEY   E   F
Sbjct: 44  LAEQIKQQTHE-LPCDDAVQEAQQEARREKNEYLKSRCAESDDQDESEKYEYCDDEEEDF 102

Query: 385 GALAPRVPAPTS 420
             + P+ P+P S
Sbjct: 103 TRVQPQRPSPES 114


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
 Frame = +1

Query: 259 PMPDGLPEDIDEGR----VNPR 312
           P+PDG+ E+IDEG+    +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742


>SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)
          Length = 644

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +1

Query: 220 VAQQAQPSIHEGQPMPDGLPEDIDEGRVNPRDDFKTRARYL-----TEXYEYDVTEARXF 384
           +A+Q +   HE  P  D + E   E R    +  K+R         +E YEY   E   F
Sbjct: 568 LAEQIKQQTHE-LPCDDAVQEAQQEARREKNEYLKSRCAESDDQDESEKYEYCDDEEEDF 626

Query: 385 GALAPRVPAPTS 420
             + P+ P+P S
Sbjct: 627 TRVQPQRPSPES 638


>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 341 LQKXTNTMLPKPVDLVLWPRGYRPQHPGGL 430
           ++K   TM  K +D +L P  Y P HP  L
Sbjct: 62  MKKKKKTMTQKTIDRLLRPIYYDPNHPAAL 91


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 129  TMLAFQSRSLTLSCXTVRPXL--RNRTSSVSQSRPTSTTV 242
            T+    SR +TLSC T R  +  RN +S V+ +R TS  V
Sbjct: 1282 TLSCNTSRDVTLSCKTSRGVILARNTSSGVTLTRNTSRGV 1321


>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
          Length = 974

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 47  INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRETVXEESDQLCL 214
           +N + GE  V G  E    +C + +  DH C      D +   R +  ++ D + L
Sbjct: 199 VNRKEGEEHVCG--EYKCSVCKEVVPPDHLCYVTVGGDALPKKRNSADDDDDSMRL 252


>SB_474| Best HMM Match : dsrm (HMM E-Value=3.2e-20)
          Length = 918

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 442 TPLEQSTRMLGPVPSGPK 389
           TP+E+ T+++GP P  P+
Sbjct: 14  TPVEEETKLIGPTPVAPQ 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,071
Number of Sequences: 59808
Number of extensions: 316321
Number of successful extensions: 982
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)