Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0104.Seq
(469 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 162 1e-40
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 162 1e-40
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 77 6e-15
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 77 6e-15
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 48 3e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 33 0.077
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 28 3.8
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 28 3.8
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 27 5.1
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p... 27 5.1
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr... 27 5.1
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 27 5.1
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF078790-3|AAC26933.1| 380|Caenorhabditis elegans Hypothetical ... 27 6.7
AC006681-4|AAK85495.1| 380|Caenorhabditis elegans Hypothetical ... 27 6.7
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 27 8.9
AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 162 bits (394), Expect = 1e-40
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
EGLKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVV YRE
Sbjct: 516 EGLKRLAKSDPMVQCIFEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRE 575
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
TV ES+Q+CLSKSPNKHNRL P
Sbjct: 576 TVQSESNQICLSKSPNKHNRLHCTAQP 602
Score = 69.3 bits (162), Expect = 1e-12
Identities = 35/71 (49%), Positives = 39/71 (54%)
Frame = +1
Query: 256 QPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAPRVPAPTSWWIAP 435
QPMPDGL +DI+ G VN RD+FK RA+ L E YEYDVTEAR P P
Sbjct: 601 QPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVT 660
Query: 436 KEFSTSMNIKD 468
K IKD
Sbjct: 661 KGVQYLNEIKD 671
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 162 bits (394), Expect = 1e-40
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
EGLKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVV YRE
Sbjct: 516 EGLKRLAKSDPMVQCIFEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRE 575
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
TV ES+Q+CLSKSPNKHNRL P
Sbjct: 576 TVQSESNQICLSKSPNKHNRLHCTAQP 602
Score = 63.7 bits (148), Expect = 6e-11
Identities = 33/71 (46%), Positives = 38/71 (53%)
Frame = +1
Query: 256 QPMPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEYDVTEARXFGALAPRVPAPTSWWIAP 435
QPMPDGL +DI+ G V+ RD+FK RA+Y E YEY VTEAR P P
Sbjct: 601 QPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEARKIWCFGPDGTGPNLLMDVT 660
Query: 436 KEFSTSMNIKD 468
K IKD
Sbjct: 661 KGVQYLNEIKD 671
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
+GL+++ KS P++ EESGEH++ G GE +++ + D+ + + I IK +DPVV + E
Sbjct: 609 DGLRKVNKSYPLLTTRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNE 668
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
TV E S C +++PNK N++ M P
Sbjct: 669 TVIETSTLKCFAETPNKKNKITMMAEP 695
Score = 33.5 bits (73), Expect = 0.077
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVD 428
IW FGP+ TGPNIL+D
Sbjct: 736 IWAFGPDTTGPNILLD 751
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
+GL+++ KS P++ EESGEH++ G GE +++ + D+ + + I IK +DPVV + E
Sbjct: 484 DGLRKVNKSYPLLTTRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNE 543
Query: 182 TVXEESDQLCLSKSPNKHNRLFMKVSP 262
TV E S C +++PNK N++ M P
Sbjct: 544 TVIETSTLKCFAETPNKKNKITMMAEP 570
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 381 IWCFGPEGTGPNILVD 428
IW FG + TGPNIL+D
Sbjct: 611 IWAFGLDTTGPNILLD 626
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
E LK LA D ++ + E+GE + AGE+HL+ C+KDL D + + S+P+V + E
Sbjct: 495 EKLKLLALLDTSLKVMELENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEPIVPFME 553
Query: 182 TVXEES 199
TV E+S
Sbjct: 554 TVIEDS 559
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYRE 181
E LK LA D ++ + E+GE + AGE+HL+ C+KDL D + + S+P+V + E
Sbjct: 495 EKLKLLALLDTSLKVMELENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEPIVPFME 553
Query: 182 TVXEES 199
TV E+S
Sbjct: 554 TVIEDS 559
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYR 178
+ L R K DP + N+E+ E IV+G GELHLEI + ++ ++ C P++ P V YR
Sbjct: 465 KALTRFTKEDPTFRREYNQEAKETIVSGMGELHLEIYAQRMKSEYNC-PVELGKPTVAYR 523
Query: 179 E 181
E
Sbjct: 524 E 524
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 33.5 bits (73), Expect = 0.077
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVXYR 178
+ L+ L + DP ++ + ++G+ IV GELHLE +KD + + + + V YR
Sbjct: 412 KALEELTREDPSMKIRFDRDTGQTIVETQGELHLE-AIKDRLKRNYKLDVFIGKLQVAYR 470
Query: 179 ETVXEE 196
E + EE
Sbjct: 471 EMLTEE 476
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 96 WSSPAPATMCSPDSSLIHCT 37
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 96 WSSPAPATMCSPDSSLIHCT 37
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 91 FSSTSDNVFS*FFINTLHHGVRFSQT 14
F+ST+ NVF F +++L HG+ F T
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMT 328
>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
protein ZK328.7b protein.
Length = 1098
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -2
Query: 372 FGNIVFVX---FCKIPSASLEVIAGIHATLINVLWQTIRHGLTFMNRRLCLLGDFERQSW 202
FG + V I +L ++ G+ TL+ + IRH TF+ LG W
Sbjct: 41 FGTAILVCDGRLATIKDPALAILKGVCLTLLGKIPDAIRHLETFVTDNDVALGALHALKW 100
Query: 201 SDSS 190
+ +S
Sbjct: 101 AHAS 104
>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
protein ZK328.7a protein.
Length = 1332
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -2
Query: 372 FGNIVFVX---FCKIPSASLEVIAGIHATLINVLWQTIRHGLTFMNRRLCLLGDFERQSW 202
FG + V I +L ++ G+ TL+ + IRH TF+ LG W
Sbjct: 41 FGTAILVCDGRLATIKDPALAILKGVCLTLLGKIPDAIRHLETFVTDNDVALGALHALKW 100
Query: 201 SDSS 190
+ +S
Sbjct: 101 AHAS 104
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 91 FSSTSDNVFS*FFINTLHHGVRFSQT 14
F+ST+ NVF F +++L HG+ F T
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMT 328
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 384 KSTGFGNIVFVXFCKIPSASLEVIAGIHATLINVLWQTIRHGLTFM 247
K GF + + F I ++ I GI+ L +L+ + H +++M
Sbjct: 128 KVNGFNYVSAMIFIIIGGSTFMSITGIYIVLTVILYMAVAHHISYM 173
>AF078790-3|AAC26933.1| 380|Caenorhabditis elegans Hypothetical
protein F36H12.9 protein.
Length = 380
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 464 LIFIEVLNSFGAIHQDVGAGTLGA 393
L+ IE L+SFG +H+D+ G A
Sbjct: 132 LVSIEHLHSFGYLHRDIKPGNFAA 155
>AC006681-4|AAK85495.1| 380|Caenorhabditis elegans Hypothetical
protein R13H9.6 protein.
Length = 380
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 464 LIFIEVLNSFGAIHQDVGAGTLGA 393
L+ IE L+SFG +H+D+ G A
Sbjct: 132 LVSIEHLHSFGYLHRDIKPGNFAA 155
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 23 KSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 151
K+D M QC N E ++I GEL ++ + LEE+ CI K
Sbjct: 743 KAD-MTQCANTEQVDNINDALGELQEKLSI--LEEEAYCIQDK 782
>AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical
protein C34H3.1 protein.
Length = 472
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 467 SLIFIEVLNSFGAIHQDVGAGTLGAKAPNXRASVT 363
S IF V+++ H + GA GAKAP+ + T
Sbjct: 11 SCIFFNVVSTLEQKHIEYGAAVWGAKAPDYSLAST 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,911,855
Number of Sequences: 27780
Number of extensions: 222140
Number of successful extensions: 680
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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