Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0104.Seq
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.40 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 393 GPEGTGPNILVDCSKGVQYLNE 458
           GP   GP+ ++D + GV Y  +
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQ 315


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 PVVXYRETVXEESDQLCLSKS-PNKHNRLFMKVSPCLMVCQRT 286
           P+V +++     +  +  +++ P     +F+ V PC  +C+ T
Sbjct: 200 PLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICELT 242


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 QPMPDGLPEDIDEGRVNPR 312
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 12  NVWLNLTPWCSV 47
           N WL  T WC V
Sbjct: 110 NRWLFTTDWCDV 121


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 QPMPDGLPEDIDEGRVNPR 312
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 262 MPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEY 360
           +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 262 MPDGLPEDIDEGRVNPRDDFKTRARYLTEXYEY 360
           +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,805
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)