Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0103.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.4  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   9.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 451  LFNRNNFSIRYW 486
            +F   NFSI YW
Sbjct: 1615 VFYNANFSINYW 1626


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 279 LNKLECSKRLKMLLEYFVHGIIEYDLGSI 193
           L+ L+ ++  K LLE      + Y+LG +
Sbjct: 387 LSLLQVAQIFKNLLENHYEEFVRYELGEL 415


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 266 SAQSG*KCCLNIS 228
           S+Q G K CLN+S
Sbjct: 32  SSQKGQKTCLNLS 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,265
Number of Sequences: 336
Number of extensions: 2055
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)