Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0103.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    29   3.2  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    29   3.2  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    28   4.3  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   5.6  

>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 158 INHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFE 262
           I H L +LK  KI P   +I  C +YS    S F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 146 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           P+  +  YLG+   NK+ P+ Y +  C K+ +  FS++ H++  K
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLND-FSKY-HNHALK 289


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 134 IRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTH 310
           I+M P  P  H+L     N     +    P   YSS+I   F H+N F   +   L TH
Sbjct: 53  IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 460 RNNFSIRYWSWNYRGC 507
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,695
Number of Sequences: 37544
Number of extensions: 222308
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)