Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0103.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 28 4.4
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19) 28 4.4
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 5.8
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 5.8
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.6
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = -1
Query: 113 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
SWI RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -1
Query: 98 RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -1
Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -1
Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDT 15
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Frame = -1
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -1
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + VFINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40
Score = 33.9 bits (74), Expect = 0.088
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 120 VKFLDRRKTNISESICQRCFHQSRTKV 40
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -1
Query: 98 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
R+T+ ++ + FINQERKLE RRR DT LVL
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 117 KFLDRRKTNISESICQRCFHQSRTKV 40
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 182 KTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHL 301
K + ++ Y+ + +S F RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 376 ICSANVSXSPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 498
I S S R+RCT S + KC + + F W S+NY
Sbjct: 139 ISSGYYGRSYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 206 SYSIIPCTKYSSSIFSRFEH 265
+Y IPCT Y+ +++SRF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 181 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 71
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
Length = 605
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 206 SYSIIPCTKYSSSIFSRFEH 265
+Y IPCT Y+ +++SRF H
Sbjct: 58 TYRGIPCTNYTENLWSRFWH 77
>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 205
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 373 TICSANVSXSPRMRCTDSAAHKCNYEL 453
T C+ NV S ++C DS CN E+
Sbjct: 157 TECACNVHGSASLQCDDSGVCPCNLEV 183
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 373 TICSANVSXSPRMRCTDSAAHKCNYEL 453
T C+ NV S ++C DS CN E+
Sbjct: 199 TECACNVHGSASLQCDDSGVCPCNLEV 225
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 102 DDPRISPLTSQYEC 143
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,717,402
Number of Sequences: 59808
Number of extensions: 265560
Number of successful extensions: 703
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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