Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0102.Seq
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 120 1e-28
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 114 7e-27
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 28 0.81
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 26 3.3
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 5.7
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 10.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 10.0
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 10.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 10.0
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 25 10.0
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 120 bits (289), Expect = 1e-28
Identities = 56/75 (74%), Positives = 65/75 (86%)
Frame = -2
Query: 548 ENAAHTPHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIM 369
E A P + G +NFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIM
Sbjct: 164 ELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIM 223
Query: 368 QLLRDNLTLWTSDTQ 324
QLLRDNLTLWTSD +
Sbjct: 224 QLLRDNLTLWTSDAE 238
Score = 28.3 bits (60), Expect = 0.81
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 550 AKMQPTHPIRLGLA 509
A++ PTHPIRLGLA
Sbjct: 163 AELAPTHPIRLGLA 176
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 114 bits (275), Expect = 7e-27
Identities = 51/69 (73%), Positives = 61/69 (88%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDN
Sbjct: 169 PMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDN 228
Query: 350 LTLWTSDTQ 324
LTLWTSD +
Sbjct: 229 LTLWTSDAE 237
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.81
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 545 NAAHTPHKAGSGVNFSVFYYEILNS 471
N AH P KA G F+VFY +++ +
Sbjct: 412 NEAHPPPKAVQGYRFNVFYPDLIGT 436
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 143 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 51
FA LPVP K C F F+ L +W+ D+
Sbjct: 31 FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 81 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 206
++T D +F + G++R RL+TF GFG PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 120 RNGKVRCERLLTFLQATARVGFGDDTAPDDVLECYSFSY 236
RNG +C RLL A++ + P D L S+
Sbjct: 367 RNGAKKCARLLLSFYASSSIPNNQGQYPTDFLSSKDMSF 405
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 28 IYIHQVSSISAIQCKYRNTKPSKMTQHLILDGTGR 132
I + Q ++I+A+ +YR +K T +ILD G+
Sbjct: 156 IEMKQFTNIAAV-LRYRGVHSAKKTAFIILDNKGK 189
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 30 LYSSGQL-DICNPV*IQKYKTVKDDTTFNFRRNGK 131
L SS QL DIC + Y DD F F +N K
Sbjct: 133 LLSSSQLSDICIKDFVTSYLVPYDDVRFFFYKNSK 167
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 491 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
Y ++ D QLA Q F +++ L +++ S ++Q ++DN
Sbjct: 449 YDDLFPYMDNFIQLAVQLFYHISKKVNCLYVEAFSSSDAVLQRIQDN 495
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 40 QVSSISAIQCKYRNTKPSKMTQHLILDGTGRSAAN 144
+++ +S Q YR PS+ +Q LI G G + +
Sbjct: 31 ELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,513
Number of Sequences: 5004
Number of extensions: 37614
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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