Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0102.Seq
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 127 5e-30
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 127 7e-30
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 126 9e-30
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 124 6e-29
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 122 1e-28
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 121 4e-28
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 112 2e-25
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 73 2e-13
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 1.9
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 29 2.5
02_02_0106 + 6814391-6817007,6817086-6817462 29 2.5
04_04_1588 - 34633057-34633824 28 5.8
10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885 27 7.7
09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040 27 7.7
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 127 bits (307), Expect = 5e-30
Identities = 59/74 (79%), Positives = 64/74 (86%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILNSPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLRDN
Sbjct: 174 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDN 233
Query: 350 LTLWTSDTQGDGDE 309
LTLWTSD DG +
Sbjct: 234 LTLWTSDNAEDGGD 247
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 127 bits (306), Expect = 7e-30
Identities = 61/78 (78%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILNSPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDN
Sbjct: 169 PIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDN 228
Query: 350 LTLWTSD-TQGDGDEPAE 300
LTLWTSD T+ GDE E
Sbjct: 229 LTLWTSDLTEDGGDEVKE 246
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 550 AKMQPTHPIRLGLA 509
A + PTHPIRLGLA
Sbjct: 162 ADLAPTHPIRLGLA 175
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 126 bits (305), Expect = 9e-30
Identities = 58/74 (78%), Positives = 65/74 (87%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDN
Sbjct: 179 PIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDN 238
Query: 350 LTLWTSDTQGDGDE 309
LTLWTSD Q DG +
Sbjct: 239 LTLWTSDMQDDGGD 252
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 547 KMQPTHPIRLGLA*ISQSFIMRY*IRQTRRVNSPNRLSTM 428
++ PTHPIRLGLA + + + +NSP+R T+
Sbjct: 173 ELSPTHPIRLGLA-------LNFSVFYYEILNSPDRACTL 205
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 124 bits (298), Expect = 6e-29
Identities = 56/74 (75%), Positives = 64/74 (86%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLRDN
Sbjct: 152 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDN 211
Query: 350 LTLWTSDTQGDGDE 309
LTLWTSD DG +
Sbjct: 212 LTLWTSDANDDGGD 225
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 550 AKMQPTHPIRLGLA 509
A + PTHPIRLGLA
Sbjct: 145 ADLAPTHPIRLGLA 158
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 122 bits (295), Expect = 1e-28
Identities = 57/74 (77%), Positives = 64/74 (86%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDN
Sbjct: 175 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDN 234
Query: 350 LTLWTSDTQGDGDE 309
LTLWTSD D E
Sbjct: 235 LTLWTSDISEDTAE 248
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 550 AKMQPTHPIRLGLA 509
A++ PTHPIRLGLA
Sbjct: 168 AELPPTHPIRLGLA 181
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 121 bits (291), Expect = 4e-28
Identities = 55/67 (82%), Positives = 62/67 (92%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDN
Sbjct: 393 PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDN 452
Query: 350 LTLWTSD 330
LTLWTSD
Sbjct: 453 LTLWTSD 459
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 550 AKMQPTHPIRLGLA 509
A++ PTHPIRLGLA
Sbjct: 386 AELPPTHPIRLGLA 399
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 112 bits (269), Expect = 2e-25
Identities = 52/80 (65%), Positives = 62/80 (77%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +N SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLLRDN
Sbjct: 159 PIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDN 218
Query: 350 LTLWTSDTQGDGDEPAEGGD 291
L LW SD D D+ E D
Sbjct: 219 LALWNSDMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = -2
Query: 485 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 321
EI+NSP++A Q+AKQA D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -2
Query: 500 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 327
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 326 QGDGDEPAEGGDN*YLAA 273
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 46 SSISAIQCKYRNTKPSKMTQHLILDGTGRSAANDF*HFYKRRLASASVMIPRQTTFSNVT 225
+ +S I+C + KP++ H I G S D + + + P + ++T
Sbjct: 82 TELSGIRCTTSSCKPNETILHTISTNNGTSNCQDTTQSFSLLMECTNHTTPSKPMHPHIT 141
Query: 226 RFLINT--DENNACA 264
L++T + +N+CA
Sbjct: 142 FQLMHTKIESSNSCA 156
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 241 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 83
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>04_04_1588 - 34633057-34633824
Length = 255
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 252 QCVCWGECGEILVVAALGRLVAIALSV*RPK 344
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885
Length = 489
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 446 WRVDTPCLANLISHNKRLRNLRQTQPYGVC 535
WRV + CLA ++ NK+ R L Q+ +C
Sbjct: 166 WRVASNCLATMV--NKKKRKLEQSDMCQIC 193
>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
Length = 339
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 255 CV-CWGECGEILVVAALGRLVAIALSV*RPK 344
CV CW C L+VAAL A AL + +PK
Sbjct: 22 CVLCWCCCFLFLIVAALAGAAAYALFLYKPK 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,374
Number of Sequences: 37544
Number of extensions: 255066
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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