Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0102.Seq
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   4e-26
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     110   9e-25
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 31   0.64 
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)                 29   2.6  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        27   7.9  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    27   7.9  
SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  114 bits (275), Expect = 4e-26
 Identities = 55/82 (67%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
 Frame = -2

Query: 551 GENAAHTPHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLI 372
           G+ A   P + G  +NFSVF+YEI  + ++AC+LAKQAFDDAIAELD+LNED YKDSTLI
Sbjct: 228 GKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAFDDAIAELDSLNEDQYKDSTLI 287

Query: 371 MQLLRDNLTLWTSDTQGD-GDE 309
           MQLLRDNLTLW+S+ Q D GD+
Sbjct: 288 MQLLRDNLTLWSSENQEDQGDD 309



 Score =  102 bits (245), Expect = 2e-22
 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
 Frame = -2

Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
           P + G  +NFSVFYYEI+    +AC LAK+AFDDAIAELDTL+ED YKDSTLIMQLLRDN
Sbjct: 146 PIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDAIAELDTLSEDQYKDSTLIMQLLRDN 205

Query: 350 LTLWTSDTQG--DGDEPAEGGD 291
           LT+     Q   +  E AE GD
Sbjct: 206 LTVVEKALQAYKEAKEAAETGD 227


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  110 bits (264), Expect = 9e-25
 Identities = 50/74 (67%), Positives = 60/74 (81%)
 Frame = -2

Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
           P + G  +NFSVFYYEI N P +AC+LAK+AFDDAIA LD L ++SYKDSTLIMQLLRDN
Sbjct: 173 PIRLGLALNFSVFYYEIENKPPEACKLAKEAFDDAIAVLDNLKDESYKDSTLIMQLLRDN 232

Query: 350 LTLWTSDTQGDGDE 309
           LTLWTS+   +G +
Sbjct: 233 LTLWTSEQDQEGQD 246


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 434 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 297
           DD   + D  ++DS  + +   QL   L+  + LW S TQGD D  A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
          Length = 983

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = -2

Query: 554 QGENAAHTPHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTL 375
           + + + + P    S  + ++ YY I  +  K      Q FDD    +   +ED+ +D+T 
Sbjct: 484 KADGSLNRPPTIWSSKHQTMQYYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATT 543

Query: 374 IMQLLRDNLTLWTSDTQGD 318
            ++L+       T+D  GD
Sbjct: 544 AIELMNAP----TTDVHGD 558


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 511  PDPALWGVWAAFSPC 555
            P P  WG W+ +SPC
Sbjct: 2242 PPPPKWGEWSTWSPC 2256


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 511 PDPALWGVWAAFSPC 555
           P P  WG W+ +SPC
Sbjct: 220 PPPPKWGEWSTWSPC 234


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 123  NGKVRCERLLTFLQATARVGFGDDTAPDDVLEC 221
            +G  RCE L    Q T R GF       DV +C
Sbjct: 1851 SGSSRCENLENGFQCTCRAGFTGKYCETDVDDC 1883


>SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +1

Query: 31  YIHQVSSISAIQCKYRNTKPSKMTQHLILDGTGRSAANDF*HFYKRRLASASVMIPRQTT 210
           YIH V SI A    +       + + L L GT R    +F HF++   A  ++ +   T 
Sbjct: 168 YIHGVFSICADPRAFHE---HNLVKELKL-GTSRFPEQNFDHFFQYSTAVLALCVSGYTH 223

Query: 211 FSNVTRFLIN 240
            S +TR L+N
Sbjct: 224 ASFLTRPLVN 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,735,499
Number of Sequences: 59808
Number of extensions: 299883
Number of successful extensions: 1069
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)