Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0102.Seq
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 130 5e-31
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 128 2e-30
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 128 2e-30
Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical pr... 52 2e-07
Z73910-3|CAA98135.1| 125|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 30 0.98
U23449-1|AAC24298.3| 488|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 9.1
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 130 bits (315), Expect = 5e-31
Identities = 63/82 (76%), Positives = 69/82 (84%), Gaps = 2/82 (2%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVF+YEILN+PDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN
Sbjct: 167 PIRLGLALNFSVFFYEILNAPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 226
Query: 350 LTLWTSDTQGDGDE--PAEGGD 291
LTLWTSD D + EGG+
Sbjct: 227 LTLWTSDAATDDTDANETEGGN 248
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 556 SKAKMQPTHPIRLGLA 509
+K KMQPTHPIRLGLA
Sbjct: 158 AKDKMQPTHPIRLGLA 173
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 128 bits (310), Expect = 2e-30
Identities = 62/78 (79%), Positives = 67/78 (85%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILN+P+ ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN
Sbjct: 166 PIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 225
Query: 350 LTLWTSDTQGDGDEPAEG 297
LTLWTSD G D+ EG
Sbjct: 226 LTLWTSDV-GAEDQEQEG 242
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 556 SKAKMQPTHPIRLGLA 509
+K KMQPTHPIRLGLA
Sbjct: 157 AKDKMQPTHPIRLGLA 172
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 128 bits (310), Expect = 2e-30
Identities = 62/78 (79%), Positives = 67/78 (85%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 351
P + G +NFSVFYYEILN+P+ ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN
Sbjct: 166 PIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 225
Query: 350 LTLWTSDTQGDGDEPAEG 297
LTLWTSD G D+ EG
Sbjct: 226 LTLWTSDV-GAEDQEQEG 242
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 556 SKAKMQPTHPIRLGLA 509
+K KMQPTHPIRLGLA
Sbjct: 157 AKDKMQPTHPIRLGLA 172
>Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical
protein F52D10.3b protein.
Length = 198
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = -2
Query: 530 PHKAGSGVNFSVFYYEILNSPDKACQLAKQ 441
P + G +NFSVF+YEILN+PDKACQLAKQ
Sbjct: 167 PIRLGLALNFSVFFYEILNAPDKACQLAKQ 196
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 556 SKAKMQPTHPIRLGLA 509
+K KMQPTHPIRLGLA
Sbjct: 158 AKDKMQPTHPIRLGLA 173
>Z73910-3|CAA98135.1| 125|Caenorhabditis elegans Hypothetical
protein M117.3 protein.
Length = 125
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 556 SKAKMQPTHPIRLGLA 509
+K KMQPTHPIRLGLA
Sbjct: 35 AKDKMQPTHPIRLGLA 50
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 328 LKAMATSLPRAATTNISPHSPQHTHCSHRCL*ENE*HSRTSSGAVS-SPKPTRAVACKNV 152
LKA+ L A T ++S S +H H + C+ H+ S VS P T A NV
Sbjct: 1043 LKAVMNQLAHALTAHLSSKSEEHKHLARTCI----QHTIRSIEPVSLLPAMTSATKKSNV 1098
Query: 151 KSR 143
K R
Sbjct: 1099 KQR 1101
>U23449-1|AAC24298.3| 488|Caenorhabditis elegans Hypothetical
protein K06A1.3 protein.
Length = 488
Score = 27.5 bits (58), Expect = 6.9
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -2
Query: 359 RDNLTLWTSDTQGDGDEPAEGGDN*YLAALTPAHALFSSVFIRKRV-TFENVVWRGIITE 183
+ N T+W D +G G E +EG +PAHA + + T + + R T+
Sbjct: 363 KSNNTVW-EDAEGSGIEISEG---------SPAHAEAQHMTSSEGPRTTKREIKRRDATD 412
Query: 182 ADASRRL*KC*KSFAADLPVPSK 114
D S + +FAADLP P +
Sbjct: 413 VDVSSDITILDSAFAADLPSPQE 435
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 96 DDTTFNFRRNGKVRCERLLT 155
D FNFRR G+ C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 96 DDTTFNFRRNGKVRCERLLT 155
D FNFRR G+ C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 96 DDTTFNFRRNGKVRCERLLT 155
D FNFRR G+ C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,462,524
Number of Sequences: 27780
Number of extensions: 215030
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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