Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0102.Seq
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.8  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   8.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 144 RLLTFLQATARVGFGDDTAPDDVLEC 221
           RL T LQAT   G   +  P DV EC
Sbjct: 131 RLNTRLQATLNCGLRLEKFPFDVQEC 156


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 3   NFNNLSYKYLYSS 41
           N+NN +YKY Y++
Sbjct: 323 NYNNNNYKYNYNN 335


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 320 DGDEPAEGGDN*YLAALTPAHALFSSVFIRKRVTFENVVWRGIITEA 180
           D   P + GD   L  L PA+    S  +R   + E   +   +TEA
Sbjct: 80  DKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFNPCLTEA 126


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 320 DGDEPAEGGDN*YLAALTPAHALFSSVFIRKRVTFENVVWRGIITEA 180
           D   P + GD   L  L PA+    S  +R   + E   +   +TEA
Sbjct: 96  DKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFNPCLTEA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,822
Number of Sequences: 438
Number of extensions: 2463
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)