Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0101.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   5.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   5.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.4  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.4  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   9.4  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   9.4  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 361 SWHLYCQEPEANNICNHGCLQQYVCXTITVFE*G 462
           S H +  +     IC  G  ++Y C   TVF+ G
Sbjct: 170 SRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIG 203


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 361 SWHLYCQEPEANNICNHGCLQQYVCXTITVFE*G 462
           S H +  +     IC  G  ++Y C   TVF+ G
Sbjct: 170 SRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIG 203


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 373 YCQEPEANNICNH 411
           YCQ+  AN +C++
Sbjct: 573 YCQKHYANGLCDY 585


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 452 SNKEDXNNCSY 484
           +NKE+ N+C Y
Sbjct: 465 NNKEEGNSCQY 475


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 364 WHLYCQEPEANNI 402
           W LYC EP    +
Sbjct: 357 WSLYCGEPPCGQL 369


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +1

Query: 367 HLYCQEPEANNICNHGC 417
           ++  +EP+ +N+C   C
Sbjct: 73  YMLFREPQLHNLCRKNC 89


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +1

Query: 367 HLYCQEPEANNICNHGC 417
           ++  +EP+ +N+C   C
Sbjct: 73  YMLFREPQLHNLCRKNC 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,243
Number of Sequences: 336
Number of extensions: 1368
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)