Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0101.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)             29   3.3  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               28   5.8  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          27   7.6  

>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 494 RINDRNSYXCLPYSNTVIVQHTYCCKXPWLQILL 393
           RIN  +S+ C+   +  IV H YCC     ++++
Sbjct: 39  RINMSHSHCCVTCHSRNIVSHPYCCSTRHTRVIV 72


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +2

Query: 383 SQKPIIFVTTXAYNSMCVXQSQYSNKEDXNNCSYHLXG---HXPPKXTSYLKATP 538
           S+ P +F        + V   Q  +    NN +YH      H PP  TSY+ A P
Sbjct: 158 SEPPPLFTPRTVPVPVLVRDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHP 212


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 488  NDRNSYXCLPYSNTVIVQHTYCCKXPWLQILLASGS*QYKCHDYGRTV 345
            ND+N Y     ++T I+ +      P  Q   A+   ++  H YGRT+
Sbjct: 3081 NDKNGYYIYIETSTGIIGNKAVLTSPQYQQAFATCQFKFSYHMYGRTI 3128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,492,703
Number of Sequences: 59808
Number of extensions: 158022
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)