Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0101.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    28   5.1  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    28   5.1  

>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
            protein 2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -1

Query: 461  PYSNTVIVQHTYCCKXPWLQILLASGS*QYKCHDYGRTVYCG*DLNLSTLFVF 303
            P    + + + +C   P + + +++G    K  DYG   YC  D +  T++ F
Sbjct: 995  PNRTRIFLYYLFCYGTPAVVVAISAG---IKWEDYGTDSYCWIDTSTPTIWAF 1044


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
            protein LAT-2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -1

Query: 461  PYSNTVIVQHTYCCKXPWLQILLASGS*QYKCHDYGRTVYCG*DLNLSTLFVF 303
            P    + + + +C   P + + +++G    K  DYG   YC  D +  T++ F
Sbjct: 995  PNRTRIFLYYLFCYGTPAVVVAISAG---IKWEDYGTDSYCWIDTSTPTIWAF 1044


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,878,850
Number of Sequences: 27780
Number of extensions: 116138
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)