Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0100.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 155 4e-39
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 155 4e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 155 4e-39
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 55 9e-09
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.073
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 6.3
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 6.3
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 155 bits (377), Expect = 4e-39
Identities = 73/112 (65%), Positives = 86/112 (76%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K P G A F AQVI+L ++PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
+PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 155 bits (377), Expect = 4e-39
Identities = 73/112 (65%), Positives = 86/112 (76%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K P G A F AQVI+L ++PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
+PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 155 bits (377), Expect = 4e-39
Identities = 73/112 (65%), Positives = 86/112 (76%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K P G A F AQVI+L ++PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
+PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 388 SPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.8 bits (126), Expect = 9e-09
Identities = 31/99 (31%), Positives = 51/99 (51%)
Frame = -2
Query: 561 FXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 382
F AQ+ +L ++ V+ HTA FA++ K+D+ T + ++ P G
Sbjct: 560 FIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMK 618
Query: 381 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 265
I L P+C+E F+++ +GRF +RD TVAVG +
Sbjct: 619 IIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKV 657
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.073
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 354 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 262
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 487 VAIQDWCEPFEI*PGWLKHNDLS 555
+++ ++ EP PGWLK N S
Sbjct: 84 ISVGEYVEPLPSVPGWLKQNIFS 106
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 377 MAASPDLMDFGLTSVDLPVRRSTFS 451
++ +PDL D L+SVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 131 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 36
G S E S+ IFY FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,815
Number of Sequences: 5004
Number of extensions: 47906
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -