Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0100.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 138 3e-33
03_01_0547 + 4093196-4093657,4094267-4095148 138 3e-33
03_01_0544 + 4082528-4082989,4083585-4084466 138 3e-33
03_01_0543 + 4076981-4077442,4078145-4079026 138 3e-33
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 50 1e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 47 1e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 47 1e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 43 2e-04
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87... 30 1.6
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 3.7
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 6.5
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 8.6
01_02_0102 - 11148219-11148563,11148650-11149534 27 8.6
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 138 bits (334), Expect = 3e-33
Identities = 65/115 (56%), Positives = 83/115 (72%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K K AA F +QVI++ + PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 318 KDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEK 377
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVTSR 247
PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V +
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 138 bits (334), Expect = 3e-33
Identities = 65/115 (56%), Positives = 83/115 (72%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K K AA F +QVI++ + PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 318 KDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEK 377
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVTSR 247
PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V +
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 138 bits (334), Expect = 3e-33
Identities = 65/115 (56%), Positives = 83/115 (72%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K K AA F +QVI++ + PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 318 KDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEK 377
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVTSR 247
PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V +
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 138 bits (334), Expect = 3e-33
Identities = 65/115 (56%), Positives = 83/115 (72%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K K AA F +QVI++ + PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 318 KDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEK 377
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVTSR 247
PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V +
Sbjct: 378 EPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKK 432
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = -2
Query: 477 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 298
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 297 DMRQTVAVGVIKAV 256
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = -2
Query: 498 LDCHTAHI--ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 325
++ H H+ A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F +
Sbjct: 593 VEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKC 651
Query: 324 PPLGRFAVRDMRQTVAVGVI 265
LGR +R T+AVGV+
Sbjct: 652 RALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = -2
Query: 498 LDCHTAHI--ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 325
++ H H+ A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F +
Sbjct: 593 VEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKC 651
Query: 324 PPLGRFAVRDMRQTVAVGVI 265
LGR +R T+AVGV+
Sbjct: 652 RALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = -2
Query: 510 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSKP 352
+ VL H+ C+ ++ E++D + K + K +K+G + + +
Sbjct: 338 YKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNL 397
Query: 351 LCVESFQEFPPLGRFAVR 298
+C+E+F +FP LGRF +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415
>05_01_0128 +
866817-866859,867789-867874,868142-868231,868337-870214,
870606-870795,870888-871483
Length = 960
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -2
Query: 594 PKTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAH 478
PK ++ KG++ +Q++VL P+ K FTPVL T+H
Sbjct: 310 PKGSKSKGSSR-RSQIVVLKPNLQR-KSFTPVLSSETSH 346
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 127
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 260 ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRR 439
A+ P TV + T ++ RG K +GL G KLT S L LT ++ +R
Sbjct: 282 AIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLSTALSPIALTCMEPKKKR 341
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 263 LMTPTATVCLMSRTAKRPRGGNSWKDST 346
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 27.5 bits (58), Expect = 8.6
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 132 FR*MKYR--SCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLK*QP**LRQQLSASCHGQ 305
F+ MK R + N V S S+FLP+V F+A P A +K P ++++ S H Q
Sbjct: 259 FKVMKERMYKIISNAIVVSYSHFLPVVPFNAFNPPPPEFALMKSDPPVVQRR---SPHRQ 315
Query: 306 QNDRGVGIPGRTLHIEA 356
G G G +H EA
Sbjct: 316 ---TGQGSGGPKIHFEA 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,809
Number of Sequences: 37544
Number of extensions: 319092
Number of successful extensions: 823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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