Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0100.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 155 3e-38
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 4e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.003
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4) 32 0.31
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 31 0.93
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.2
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014) 29 2.9
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 29 2.9
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 5.0
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 6.6
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 6.6
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 6.6
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 6.6
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 6.6
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 6.6
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 28 6.6
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 27 8.7
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11) 27 8.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 155 bits (375), Expect = 3e-38
Identities = 72/112 (64%), Positives = 87/112 (77%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K PK F AQVIV+ ++PVLDCHTAHIACKF ++ EK+DRR+GK E
Sbjct: 189 KNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLED 248
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V
Sbjct: 249 NPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSV 300
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -2
Query: 444 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 295
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -2
Query: 381 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 265
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
Length = 598
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 340 VLPGIPTPRSFCCP*HEADSCCRSHQGCH 254
+L G T R F C +CCRSH GCH
Sbjct: 330 LLYGPVTRRLFGCNLSRKKNCCRSHAGCH 358
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = -2
Query: 480 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 352
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 392 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 499
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 459 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 319
EI R TG++TE+N ++ SG+ I +V + C+ Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 17 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 157
+QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355
>SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 395 LMDFGLTSVDLPVRRSTFSLISANLQAMWAVWQSKTGVNRLRF 523
LM F +T+ D P F L A + +W +W+ K VN+ R+
Sbjct: 386 LMHFHVTASDTP----EFPLHHAFIDKIWDMWEKKHKVNKYRY 424
>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
Length = 406
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 395 LMDFGLTSVDLPVRRSTFSLISANLQAMWAVWQSKTGVNRLRF 523
LM F +T+ D P F L A + +W +W+ K VN+ R+
Sbjct: 329 LMHFHVTASDTP----EFPLHHAFIDKIWDMWEKKHKVNKYRY 367
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -2
Query: 486 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 307
T H+A + E ++ + T K V+ S + + +L S +EFP LG+
Sbjct: 103 TVHLAALYIEHMTEIIQNTEKPPSVSDASSPGTTSDLDDLETDFTFSDFSLEEFPELGKL 162
Query: 306 AVR 298
A+R
Sbjct: 163 ALR 165
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 269 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 364
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 254 VTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 352
+T+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 375 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 286
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 364 TFQASMCRVLPGIPTPRSFCCP*HEADSCCRSHQGCHF 251
T + R LPGI P CC H DS + + HF
Sbjct: 2446 TEETEEMRTLPGIANPEGPCCVNHTMDS-NKHYSDTHF 2482
>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
Length = 461
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -3
Query: 179 VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 18
V++ + A++ P V K+KR SFL Y V +F ++ +V+H ++E
Sbjct: 3 VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,583,164
Number of Sequences: 59808
Number of extensions: 373030
Number of successful extensions: 1024
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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