Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0100.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 154 5e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 154 5e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 154 5e-38
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 51 5e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 44 8e-05
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 2.5
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 4.4
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 4.4
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 4.4
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 28 5.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 154 bits (373), Expect = 5e-38
Identities = 75/112 (66%), Positives = 85/112 (75%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K K A F AQVI++ +TPVLDCHTAHIACKF E+KEKVDRRTGK E
Sbjct: 296 KQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVED 355
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 356 FPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 154 bits (373), Expect = 5e-38
Identities = 75/112 (66%), Positives = 85/112 (75%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K K A F AQVI++ +TPVLDCHTAHIACKF E+KEKVDRRTGK E
Sbjct: 330 KQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVED 389
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 390 FPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 154 bits (373), Expect = 5e-38
Identities = 75/112 (66%), Positives = 85/112 (75%)
Frame = -2
Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
K K A F AQVI++ +TPVLDCHTAHIACKF E+KEKVDRRTGK E
Sbjct: 330 KQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVED 389
Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 390 FPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 51.2 bits (117), Expect = 5e-07
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = -2
Query: 561 FXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 382
F A+V+VL ++ VL +A + +D++TG+ K +K +
Sbjct: 431 FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEK 488
Query: 381 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 256
I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 489 CIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -2
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 319
L H+ + C F + +++ G+ + P+ I G +A+V + + +E+F
Sbjct: 508 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 567
Query: 318 LGRFAVRDMRQTVAVGVIKAV 256
LGR R T+A G+++ V
Sbjct: 568 LGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = -2
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 319
L H+ + C F + +++ G+ + P+ I G +A+V + + +E+F
Sbjct: 526 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 585
Query: 318 LGRFAVRDMRQTVAVGVIKAV 256
LGR R T+A G+++ V
Sbjct: 586 LGRVTFRAGGNTIAAGIVEKV 606
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 116 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 9
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 248 LEVTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 355
+++ AL P T ++CL + K P GN+ D T RG
Sbjct: 172 VDMMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,981
Number of Sequences: 27780
Number of extensions: 277455
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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