Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0100.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   185   3e-49
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   183   1e-48
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   117   1e-28
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   0.98 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   0.98 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   0.98 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   6.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   6.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.2  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  185 bits (450), Expect = 3e-49
 Identities = 90/113 (79%), Positives = 95/113 (84%)
 Frame = -2

Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
           K   PKGAADF AQVIVL         +TPVLDCHTAHIACKFA+IKEK DRR GK+TE 
Sbjct: 330 KNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEE 389

Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVT 253
           NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAVT
Sbjct: 390 NPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVT 442


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  183 bits (446), Expect = 1e-48
 Identities = 89/113 (78%), Positives = 96/113 (84%)
 Frame = -2

Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
           K   P+GAADF AQVIVL         +TPVLDCHTAHIACKFAEIKEK DRRTGK+TE 
Sbjct: 330 KNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEE 389

Query: 411 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVT 253
           NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+VT
Sbjct: 390 NPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVT 442


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  117 bits (281), Expect = 1e-28
 Identities = 58/79 (73%), Positives = 62/79 (78%)
 Frame = -2

Query: 591 KTTQPKGAADFXAQVIVL*PSWSNLKRFTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 412
           K   P+GAADF AQVIVL         +TPVLDCHTAHIACKFAEIKEK DRRTGK+TE 
Sbjct: 41  KNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEE 100

Query: 411 NPKSIKSGDAAIVNLVPSK 355
           NPKSIKSGDAAIV L P+K
Sbjct: 101 NPKSIKSGDAAIVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 KYRSCMKNCAVNSSSYFLPLVAFS 215
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 286 DSCCRSHQGC 257
           D+CCR+H  C
Sbjct: 56  DACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 KYRSCMKNCAVNSSSYFLPLVAFS 215
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 286 DSCCRSHQGC 257
           D+CCR+H  C
Sbjct: 61  DACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 KYRSCMKNCAVNSSSYFLPLVAFS 215
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 286 DSCCRSHQGC 257
           D+CCR+H  C
Sbjct: 61  DACCRTHDMC 70


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 CSPFFLRNTFR*MKYRSCMKN 167
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 536 NHPGQISNGSHQSWIATLPT 477
           N PG  + G H + ++T P+
Sbjct: 69  NSPGSFTAGCHSNLLSTSPS 88


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 536 NHPGQISNGSHQSWIATLPT 477
           N PG  + G H + ++T P+
Sbjct: 69  NSPGSFTAGCHSNLLSTSPS 88


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 411 NPKSIKSGDAAIVNLVPSKPLC 346
           NP+    G   +V L PS P C
Sbjct: 66  NPEHKPPGPKDLVYLEPSPPFC 87


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 411 NPKSIKSGDAAIVNLVPSKPLC 346
           NP+    G   +V L PS P C
Sbjct: 67  NPEHKPPGPKDLVYLEPSPPFC 88


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 389 EMQPLSTWYLPSL 351
           +  P+  WY+PSL
Sbjct: 589 DKNPVQLWYVPSL 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,672
Number of Sequences: 438
Number of extensions: 3183
Number of successful extensions: 23
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)