Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0099.Seq
(479 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 144 1e-33
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 125 4e-28
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 121 7e-27
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 109 2e-23
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 107 2e-22
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 104 1e-21
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 103 2e-21
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 95 5e-19
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 89 6e-17
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 83 3e-15
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 79 4e-14
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 75 6e-13
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 73 3e-12
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 69 5e-11
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 67 2e-10
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 65 9e-10
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 59 4e-08
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 45 8e-04
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 42 0.009
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 37 0.20
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 36 0.47
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 34 1.4
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 2.5
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 33 4.4
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 144 bits (348), Expect = 1e-33
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
FTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DAERSF
Sbjct: 25 FTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSF 84
Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
RKF+L+AE V GR+VL N HGM L
Sbjct: 85 RKFKLVAESVNGRDVLTNFHGMAL 108
Score = 118 bits (284), Expect = 7e-26
Identities = 52/74 (70%), Positives = 65/74 (87%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TDKLR MVKKWQTLIE ++DVKTTDG++LRVFCIG T KDS+SQRKTCYAQH+Q++ IR
Sbjct: 110 TDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRA 169
Query: 436 KMCEIITRDVTNSE 477
KM II R++T+++
Sbjct: 170 KMTAIIKREITSTD 183
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 125 bits (302), Expect = 4e-28
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D E +F
Sbjct: 25 FSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND---EVAF 81
Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
RKF+LI E VQG+N L N HGMDL
Sbjct: 82 RKFKLITEDVQGKNCLTNFHGMDL 105
Score = 103 bits (248), Expect = 2e-21
Identities = 47/73 (64%), Positives = 59/73 (80%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKK 438
DK+ MVKKWQT+IEA++DVKTTDGY+LR+FC+G T K + RKT YAQH QVR IRKK
Sbjct: 108 DKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKK 167
Query: 439 MCEIITRDVTNSE 477
M EI+TR+V ++
Sbjct: 168 MMEIMTREVQTND 180
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 121 bits (292), Expect = 7e-27
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +++
Sbjct: 419 FAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--QAY 476
Query: 182 RKFRLIAEYVQGRNVLCNXHGMD 250
RK RL AE VQGRNVL N GMD
Sbjct: 477 RKIRLRAEDVQGRNVLTNFWGMD 499
Score = 97.5 bits (232), Expect = 1e-19
Identities = 44/74 (59%), Positives = 56/74 (75%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TDKLR +V+KWQTLIEA++DVKTTD Y LR+FCI T K +KTCYAQ +Q+R IR+
Sbjct: 502 TDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRR 561
Query: 436 KMCEIITRDVTNSE 477
KM EI+T T+ +
Sbjct: 562 KMREIMTNMATSCD 575
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 109 bits (263), Expect = 2e-23
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+ GRVFEVSLADLQ D E +F
Sbjct: 25 FSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQND---EVAF 78
Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
RKF+LI E VQG+N L N HG+DL
Sbjct: 79 RKFKLITEDVQGKNCLTNFHGVDL 102
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 107 bits (256), Expect = 2e-22
Identities = 53/83 (63%), Positives = 64/83 (77%)
Frame = +2
Query: 5 TRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFR 184
++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E +FR
Sbjct: 26 SKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---EVAFR 82
Query: 185 KFRLIAEYVQGRNVLCNXHGMDL 253
KF+LI E VQG+ L N M L
Sbjct: 83 KFKLITEDVQGKRCLINFRSMGL 105
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 104 bits (249), Expect = 1e-21
Identities = 54/88 (61%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 169
FTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++ D
Sbjct: 19 FTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK--DDE 76
Query: 170 ERSFRKFRLIAEYVQGRNVLCNXHGMDL 253
+ FRK +L AE V+GRNVL N +GMDL
Sbjct: 77 SQVFRKIKLRAEEVEGRNVLTNFYGMDL 104
Score = 85.8 bits (203), Expect = 4e-16
Identities = 39/74 (52%), Positives = 55/74 (74%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
+DKLR ++ KW TLIE +DVKTTDGY LRVF I T K ++KT YA+ ++V+AIRK
Sbjct: 106 SDKLRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRK 165
Query: 436 KMCEIITRDVTNSE 477
KM +I+T V++++
Sbjct: 166 KMVDILTETVSSND 179
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 103 bits (248), Expect = 2e-21
Identities = 49/83 (59%), Positives = 61/83 (73%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F RKDWY +KAP+ F+ R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D +F
Sbjct: 24 FARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED--HAF 81
Query: 182 RKFRLIAEYVQGRNVLCNXHGMD 250
RK +L + VQG+N L N HG+D
Sbjct: 82 RKIKLRVDEVQGKNCLTNFHGLD 104
Score = 84.6 bits (200), Expect = 1e-15
Identities = 39/71 (54%), Positives = 53/71 (74%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F I T + +KT YA +Q+RAIR+
Sbjct: 107 SDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAVTKRRPNQIKKTTYAASSQIRAIRR 166
Query: 436 KMCEIITRDVT 468
KM EII R+ +
Sbjct: 167 KMTEIIQREAS 177
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 95.5 bits (227), Expect = 5e-19
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +2
Query: 8 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 187
RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL E ++RK
Sbjct: 27 RKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRK 86
Query: 188 FRLIAEYVQGRNVLCNXHGMDL 253
R + VQGRN+L H M++
Sbjct: 87 VRFTVQEVQGRNLLTQFHSMEV 108
Score = 60.9 bits (141), Expect = 1e-08
Identities = 24/68 (35%), Positives = 43/68 (63%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TDK+ +++KW T +E ++VKT DGY +R+F + T + Q + CYA+ V+ +R
Sbjct: 110 TDKMANLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRM 169
Query: 436 KMCEIITR 459
++ ++I R
Sbjct: 170 RITKMIKR 177
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 88.6 bits (210), Expect = 6e-17
Identities = 39/74 (52%), Positives = 56/74 (75%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TDKLR +VKKW TLIE ++DVKTTDG+++R+FCIG T++ S +KT YA+ Q++ IRK
Sbjct: 109 TDKLRSIVKKWCTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRK 168
Query: 436 KMCEIITRDVTNSE 477
M +IT++ + E
Sbjct: 169 IMNNLITKEAASRE 182
Score = 77.8 bits (183), Expect = 1e-13
Identities = 40/84 (47%), Positives = 54/84 (64%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LADL +
Sbjct: 26 FSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKFGAYN 85
Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
KF+ E V G++ L HG+ L
Sbjct: 86 YKFK--CEDVNGKDCLMIFHGLKL 107
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 83.0 bits (196), Expect = 3e-15
Identities = 37/83 (44%), Positives = 58/83 (69%)
Frame = +2
Query: 5 TRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFR 184
+RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LADL+ D ++++R
Sbjct: 27 SRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSNDKAWR 85
Query: 185 KFRLIAEYVQGRNVLCNXHGMDL 253
K +L+ + V GRN + +G+D+
Sbjct: 86 KVKLVIDEVDGRNAKTSFYGLDI 108
Score = 78.2 bits (184), Expect = 9e-14
Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSL---SQRKTCYAQHTQVRAI 429
D+L M++KWQTLIEA +D KT DGY++RVF + T K S S TCYA+ +QVRAI
Sbjct: 111 DRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAI 170
Query: 430 RKKMCEIITRD 462
R+K+ IT +
Sbjct: 171 RRKINTFITNE 181
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 79.4 bits (187), Expect = 4e-14
Identities = 44/82 (53%), Positives = 55/82 (67%)
Frame = +2
Query: 8 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 187
+KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ D + RK
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQND---KVVVRK 68
Query: 188 FRLIAEYVQGRNVLCNXHGMDL 253
F+LI E ++G+N L N +GMDL
Sbjct: 69 FKLITEDMRGKNGLTNSYGMDL 90
Score = 44.0 bits (99), Expect = 0.002
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIG-XTNKDSLSQRKTCYAQHTQVRAI 429
DK V KWQ ++EA+ DVKT D Y+L +FC+G TN + R+ AQ+ QV I
Sbjct: 93 DKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYTTNVTTRYARQLVCAQYQQVHQI 149
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 75.4 bits (177), Expect = 6e-13
Identities = 33/70 (47%), Positives = 49/70 (70%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKK 438
DK+ M+KK QTLIE ++ ++ DGY+LR+F I T QRKT YAQ +Q++ IRKK
Sbjct: 107 DKIFGMIKKRQTLIETQVEARSQDGYILRIFVIAFTKSIKNQQRKTTYAQRSQIKDIRKK 166
Query: 439 MCEIITRDVT 468
+ EI+ ++V+
Sbjct: 167 IVEIVLKEVS 176
Score = 72.1 bits (169), Expect = 6e-12
Identities = 33/81 (40%), Positives = 54/81 (66%)
Frame = +2
Query: 8 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 187
RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLADLQ +D + ++RK
Sbjct: 24 RKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-QMAWRK 82
Query: 188 FRLIAEYVQGRNVLCNXHGMD 250
+LI + V+G + +G+D
Sbjct: 83 VKLIIDDVEGTRCRTSFYGLD 103
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 73.3 bits (172), Expect = 3e-12
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKK 438
DKL MV KWQ+ IEA++DVKTTDGY LR F I T K Q+ YAQ T+++ +R +
Sbjct: 34 DKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQE-DQKSHAYAQTTRIKKLRAE 92
Query: 439 MCEIITRDVTNSE 477
+ E++ R+V +
Sbjct: 93 IVEVVQREVARCD 105
Score = 37.9 bits (84), Expect = 0.12
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 179 FRKFRLIAEYVQGRNVLCNXHGMDL 253
FRKF+L E VQGR+ L N HGMDL
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDL 31
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 68.9 bits (161), Expect = 5e-11
Identities = 33/96 (34%), Positives = 50/96 (52%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L DL +
Sbjct: 22 YLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGN 81
Query: 182 RKFRLIAEYVQGRNVLCNXHGMDLKPISSGGWLKNG 289
KF L + V L N HGMD+ G + G
Sbjct: 82 TKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKG 117
Score = 45.2 bits (102), Expect = 8e-04
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +1
Query: 274 MVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 453
+ +K I+ +D+ TTDGY+LRVF I T++ +RK C+ + +R +R + E +
Sbjct: 113 LFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETL 172
Query: 454 TRDV 465
++
Sbjct: 173 HNEL 176
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 67.3 bits (157), Expect = 2e-10
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
+DK + M+KKW TLIEA D+ DG V RVF +G T + +KTCY +H+ + IRK
Sbjct: 59 SDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRK 118
Query: 436 KMCEIITRDVTNSE 477
M ++I +++ +
Sbjct: 119 IMFDVIEEELSGCD 132
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 64.9 bits (151), Expect = 9e-10
Identities = 28/73 (38%), Positives = 46/73 (63%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKK 438
DK+ ++KKW TLIE ++ KT DGY L++F I + K + KT Y +Q RA+R++
Sbjct: 104 DKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRR 163
Query: 439 MCEIITRDVTNSE 477
+ +II ++ N +
Sbjct: 164 ITDIIIKEGINMD 176
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 59.3 bits (137), Expect = 4e-08
Identities = 26/66 (39%), Positives = 44/66 (66%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKK 438
DKL +++K++T+I+A++D KT DG++LR+F IG T K + S + YA + R +R
Sbjct: 104 DKLDSIMRKYRTMIDASVDAKTADGFILRLFTIGFTKKLANSHKNHTYANSHKARQVRDV 163
Query: 439 MCEIIT 456
M + +T
Sbjct: 164 MIKALT 169
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 45.2 bits (102), Expect = 8e-04
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = -2
Query: 217 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 38
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 37 RSLDIVPIFASE 2
R L+++P+ S+
Sbjct: 119 RRLNVIPVLLSK 130
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 41.5 bits (93), Expect = 0.009
Identities = 25/74 (33%), Positives = 45/74 (60%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TD +R +VK+ + I+AN+DV+T DG+V+RV T K A+ +Q++AIR+
Sbjct: 89 TDYVRSIVKRQTSRIDANVDVRTKDGFVIRVKPTCFTIK---------RARSSQMQAIRE 139
Query: 436 KMCEIITRDVTNSE 477
M +I+ + + ++
Sbjct: 140 MMVDIVKKRASETD 153
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens
(Human)
Length = 119
Score = 37.1 bits (82), Expect = 0.20
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTT 70
F++KDWYDVKA +MF+ R +G T
Sbjct: 25 FSKKDWYDVKALAMFNIRNIGKT 47
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 35.9 bits (79), Expect = 0.47
Identities = 26/84 (30%), Positives = 40/84 (47%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F K+WY V AP+ F++ +G TL + G I GRV E +L D+ D +
Sbjct: 12 FRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQNIK 64
Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
FR+ E + G + + G +L
Sbjct: 65 MIFRI--EEIGGNSAYTSFLGHEL 86
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 34.3 bits (75), Expect = 1.4
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRKK 438
D +R +V++ + I+ IDV T DGY +RV + T T A+ +Q RAIRK+
Sbjct: 83 DYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFT---------TRRAKTSQQRAIRKE 133
Query: 439 MCEII 453
M ++I
Sbjct: 134 MFKVI 138
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.5 bits (73), Expect = 2.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 465 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGXT 358
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 32.7 bits (71), Expect = 4.4
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 259 DKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDS-LSQRK 393
D LR +V++ + +EA+I V TTD Y +RV + T K + SQ K
Sbjct: 87 DYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALTTKKADRSQEK 132
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,717,739
Number of Sequences: 1657284
Number of extensions: 8540186
Number of successful extensions: 22770
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22756
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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