Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0099.Seq
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.84 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   2.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.8  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   7.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 382 SRSPYWXNQCRRHVERIHRLSSHQC 308
           +  P+  ++CR    R H L  H+C
Sbjct: 243 NEKPFECDKCRGRFRRRHHLVHHKC 267


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 272 GWLKNGRLSS 301
           GWLK G+LSS
Sbjct: 124 GWLKKGKLSS 133


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 112 SFRSNFRSLGTVDKRGADLPLAEHRRSLDIVP 17
           S  S+  SL  + K  A LP+ +H R   +VP
Sbjct: 2   SLYSSINSLVLISKIFALLPVKKHHRLEKLVP 33


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 392 LRWLKESLLVXPMQKTRRTYPSVVFTSMLASMR 294
           ++W K++ L       R+T P+ V T+    +R
Sbjct: 286 MKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVR 318


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 339 NVSIGCLHINVGFDESLPFFNH---PPE 265
           N+S  CL++N+   + L   +H   PP+
Sbjct: 8   NISEDCLYLNIWVPQRLRIRHHGDKPPQ 35


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 392 LRWLKESLLVXPMQKTRRTYPSVVFTSMLASMR 294
           ++W K++ L       R+T P+ V T+    +R
Sbjct: 286 MKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVR 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,066
Number of Sequences: 336
Number of extensions: 2260
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)