Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0099.Seq
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   100   2e-22
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    95   5e-21
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    26   3.4  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.8  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   7.8  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 99.5 bits (237), Expect = 2e-22
 Identities = 47/84 (55%), Positives = 61/84 (72%)
 Frame = +2

Query: 2   FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
           F+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D E SF
Sbjct: 24  FSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEEHSF 81

Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
           RK +L  E +QG++ L + +G D+
Sbjct: 82  RKVKLRVEDIQGKSCLTSFNGFDM 105



 Score = 79.0 bits (186), Expect = 3e-16
 Identities = 35/66 (53%), Positives = 50/66 (75%)
 Frame = +1

Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
           +DKLR +V+KWQ+ IEAN  +KTTDGY+ R+F IG T++     +KT YAQ +Q+RAI +
Sbjct: 107 SDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQ 166

Query: 436 KMCEII 453
           KM ++I
Sbjct: 167 KMFQVI 172


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 95.1 bits (226), Expect = 5e-21
 Identities = 44/84 (52%), Positives = 61/84 (72%)
 Frame = +2

Query: 2   FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
           F+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D E +F
Sbjct: 24  FSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDEEHAF 81

Query: 182 RKFRLIAEYVQGRNVLCNXHGMDL 253
           RK +L  E +QG++ L + +G+ +
Sbjct: 82  RKVKLRVEDIQGKSCLTSFNGLSI 105



 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 37/72 (51%), Positives = 53/72 (73%)
 Frame = +1

Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
           +DKLR +V+KWQT IEA+  +KTTDGY+ RVF IG T + +   +KT YAQ +Q+RAIR+
Sbjct: 107 SDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQ 166

Query: 436 KMCEIITRDVTN 471
           KM ++I    ++
Sbjct: 167 KMFQVIQNQTSS 178


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 312 NVGFDESLPFFNHPPELIGLRSXPXKLXSTLRPCTYSAINLNLR 181
           +V  D SLPFF  P  +   +    +L  T      SAI+  LR
Sbjct: 264 DVSMDWSLPFFKQPLSIQNWKFGVRRLFPTFTFAVVSAIDFVLR 307


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 LRWMVKKWQTLIEANIDVKTTDGYVLR 345
           +RWM  K Q   + N+D K + G  +R
Sbjct: 358 VRWMATKKQKQKKENVDTKASKGRKIR 384


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 109 FRSNFRSLGTVDKRGADLPLAEH 41
           F  + RSL +VD     LPL EH
Sbjct: 44  FSRSHRSLSSVDVSSPSLPLREH 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,341
Number of Sequences: 5004
Number of extensions: 36106
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)