Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0099.Seq
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 117 6e-27
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 116 1e-26
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 116 1e-26
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 4.5
01_06_1543 - 38138253-38138855,38139000-38139239 27 6.0
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 7.9
05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278 27 7.9
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 117 bits (281), Expect = 6e-27
Identities = 58/82 (70%), Positives = 68/82 (82%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++
Sbjct: 24 FSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAY 81
Query: 182 RKFRLIAEYVQGRNVLCNXHGM 247
RK RL AE VQGRNVL N GM
Sbjct: 82 RKVRLRAEDVQGRNVLTNFWGM 103
Score = 96.3 bits (229), Expect = 1e-20
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIG T + ++TCYAQ +Q+R IR+
Sbjct: 107 TDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRR 166
Query: 436 KMCEIITRDVTNSE 477
KM EI+ + +
Sbjct: 167 KMVEIMANQASTCD 180
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 116 bits (279), Expect = 1e-26
Identities = 58/82 (70%), Positives = 67/82 (81%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++
Sbjct: 24 FAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAY 81
Query: 182 RKFRLIAEYVQGRNVLCNXHGM 247
RK RL AE VQG+NVL N GM
Sbjct: 82 RKIRLRAEDVQGKNVLTNFWGM 103
Score = 96.7 bits (230), Expect = 9e-21
Identities = 42/74 (56%), Positives = 57/74 (77%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIG T + ++TCYAQ +Q+R IR+
Sbjct: 107 TDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRR 166
Query: 436 KMCEIITRDVTNSE 477
KM EI+ ++ +
Sbjct: 167 KMVEIMVNQASSCD 180
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 116 bits (278), Expect = 1e-26
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = +2
Query: 2 FTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSF 181
F +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D +++
Sbjct: 24 FAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAY 81
Query: 182 RKFRLIAEYVQGRNVLCNXHGM 247
RK RL AE VQG+NVL N GM
Sbjct: 82 RKIRLRAEDVQGKNVLTNFWGM 103
Score = 99.1 bits (236), Expect = 2e-21
Identities = 43/74 (58%), Positives = 58/74 (78%)
Frame = +1
Query: 256 TDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIRK 435
TDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIG T + ++TCYAQ +Q+R IR+
Sbjct: 107 TDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRR 166
Query: 436 KMCEIITRDVTNSE 477
KM EI+ ++ +
Sbjct: 167 KMVEIMANQASSCD 180
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 136 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 44
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>01_06_1543 - 38138253-38138855,38139000-38139239
Length = 280
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -1
Query: 407 WA*HVLRWLKESLLVXPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSV*GPXRXSCX 228
WA WL+E+LL + Y +A HFL +H++L G +
Sbjct: 190 WAAEFDGWLQEALLAGGRHDDVKQYEEKAPNGKMAHPSPDHFLPLHVALGAAGEDAKAEL 249
Query: 227 AHY 219
H+
Sbjct: 250 IHH 252
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 65 TTLVNRTQGTKIASEGLKGRVFEV 136
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278
Length = 583
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 313 DVKTTDGYVLRVFCIGXTNKDSLSQRKTCYAQHTQVRAIR 432
+V TD ++R F +G N L R C+++ RAIR
Sbjct: 463 NVGETDDGLIR-FALGCENLRKLELRSCCFSEQALARAIR 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,339
Number of Sequences: 37544
Number of extensions: 237962
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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